[FieldTrip] Granger causality

[Diego Lozano-Soldevilla]

Hi Eric,
I'll be relevant to you to know first how fieldtrip deals with plexon data:
http://www.fieldtriptoolbox.org/getting_started/plexon
This tutorial shows you how to read spikes and LFPs and cut them into
epochs for latter processing:
http://www.fieldtriptoolbox.org/tutorial/spikefield
I recommend you take a look to the following tutorial paper about Granger
causality (and other state of the art connectivity measures)
https://www.frontiersin.org/articles/10.3389/fnsys.2015.00175/full
You'll find the matlab code kindly supplied by the authors to reproduce all
the figures: you can explore it and try to adapt it to your reseach
question.
I hope that helps,
Diego


On Wed, 29 Aug 2018 at 14:35, Eric Gabriel <
ericgabriel.rodrigues at hotmail.com> wrote:

> Hi, my name is Eric Rodrigues
> I am a Master's student in Neuroengineering at the Santos Dumont Institute
> in Brazil.
>
> I am studying about Granger causality and I have some doubts that I could
> not heal for the documentation of the site.
>
> I am basically analyzing the local field potentials of 64 channels
> recorded in rats in 4 regions of the brain to infer causal relationships.
> The experiment is a tactile discrimination task.
>
> My question is how to create the data windows according to the events that
> occur in the experiment. The data was registered in Plexon and has
> extension ".plx"
>
> Thanks in advance.
>
> *Eric Gabriel Oliveira Rodrigues*
> *Engenheiro Civil - CREA: 2116637597 - RN*
> * Mestrando em Neuroengenharia Edmond and Lily Safra International
> Institute of Neuroscience Macaiba, RN - Brazil. *
> *(84) 99627-5378*
>
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> https://doi.org/10.1371/journal.pcbi.1002202
>
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