[FieldTrip] ERROR in fieldtrip sourcemodel tutorial freesurfer pipeline

Schoffelen, J.M. (Jan Mathijs) jan.schoffelen at donders.ru.nl
Fri Aug 10 14:14:11 CEST 2018

Hi James,

This looks like a freesurfer related issue, rather than like a fieldtrip related issue. Perhaps it’s better to ask for help on the freesurfer discussion list.

Best wishes,

J.M.Schoffelen, MD PhD
Senior Researcher, VIDI-fellow - PI, language in interaction
Telephone: +31-24-3614793
Physical location: room 00.028
Donders Centre for Cognitive Neuroimaging, Nijmegen, The Netherlands

On 3 Aug 2018, at 16:34, James Stieger <stieg030 at umn.edu<mailto:stieg030 at umn.edu>> wrote:


My name is James Stieger and I am a PhD student in biomedical engineering at the University of Minnesota studying brain computer interfaces.

I have been going through the fieldtrip tutorials and I encounter the error in the source model tutorial found here: http://www.fieldtriptoolbox.org/tutorial/sourcemodel

I have been following the pipeline outlined on the web page and typically receive the notification:

recon-all -s Subject01 finished without error

However, when executing the command:

recon-all -finalsurfs -subjid Subject01

I receive the following errors in the recon-all.log:
mris_convert --volume Subject01 lh .../fieldtrip/Tutorial/FreeSurfer/Subject01/surf/lh.volume

MRISread(.../fieldtrip/Tutorial/FreeSurfer/Subject01/surf/lh.white): could not open file
No such file or directory

ERROR: vertexvol

mris_convert --volume Subject01 lh .../fieldtrip/Tutorial/FreeSurfer/Subject01/surf/lh.volume

and in the surf error.log:
MRISread(.../fieldtrip/Tutorial/FreeSurfer/Subject01/surf/lh.white): could not open file

however the command
recon-all -white      -subjid Subject01

also finished without error.

Can someone help?
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