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Hi James,
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<div class="">This looks like a freesurfer related issue, rather than like a fieldtrip related issue. Perhaps it’s better to ask for help on the freesurfer discussion list.</div>
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<div class="">Best wishes,</div>
<div class="">Jan-Mathijs</div>
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<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
J.M.Schoffelen, MD PhD<br class="">
Senior Researcher, VIDI-fellow - PI, language in interaction<br class="">
Telephone: +31-24-3614793</div>
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Physical location: room 00.028</div>
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Donders Centre for Cognitive Neuroimaging, Nijmegen, The Netherlands<br class="">
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<div class="">On 3 Aug 2018, at 16:34, James Stieger <<a href="mailto:stieg030@umn.edu" class="">stieg030@umn.edu</a>> wrote:</div>
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<div dir="ltr" class="">Hello!
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<div class="">My name is James Stieger and I am a PhD student in biomedical engineering at the University of Minnesota studying brain computer interfaces.</div>
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<div class="">I have been going through the fieldtrip tutorials and I encounter the error in the source model tutorial found here: <a href="http://www.fieldtriptoolbox.org/tutorial/sourcemodel" class="">http://www.fieldtriptoolbox.org/tutorial/sourcemodel</a></div>
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<div class="">I have been following the pipeline outlined on the web page and typically receive the notification:</div>
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<span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures">recon-all -s Subject01 finished without error</span></div>
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<div class="">However, when executing the command:</div>
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<span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures">recon-all -finalsurfs -subjid Subject01</span></div>
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<div class="">I receive the following errors in the recon-all.log:</div>
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<div class="">mris_convert --volume Subject01 lh .../fieldtrip/Tutorial/FreeSurfer/Subject01/surf/lh.volume</div>
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<div class="">MRISread(.../fieldtrip/Tutorial/FreeSurfer/Subject01/surf/lh.white): could not open file</div>
<div class="">No such file or directory</div>
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<div class="">ERROR: vertexvol</div>
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<div class="">mris_convert --volume Subject01 lh .../fieldtrip/Tutorial/FreeSurfer/Subject01/surf/lh.volume</div>
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<div class="">and in the surf error.log:</div>
<div class="">MRISread(.../fieldtrip/Tutorial/FreeSurfer/Subject01/surf/lh.white): could not open file<br class="">
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<div class="">however the command </div>
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<span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures">recon-all -white<span class="gmail-Apple-converted-space">
</span>-subjid Subject01</span></div>
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<div class="">also finished without error.</div>
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<div class="">Can someone help?</div>
<div class="">James</div>
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https://doi.org/10.1371/journal.pcbi.1002202<br class="">
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