[FieldTrip] Band Limited Power Analysis in Fieldtrip?
Ian M. Andolina
i.andolina at ucl.ac.uk
Tue Feb 25 11:25:02 CET 2014
Hi, I wanted to use Fieldtrip to recreate the methodology used in a
paper by Leopold et al., 2003
<http://dx.doi.org/10.1093/cercor/13.4.422> — the relevant methods
section is the following:
/“The LFP signals were resampled to 1 kHz, and then band-pass filtered
into seven frequency ranges using a second order, bi-directional,
zero-phase Chebyshev type-1 filter. The frequency ranges, as well as
their rough mapping onto classically defined electroencephalographic
conventions, were the following: δ (1–4 Hz), θ (5–8 Hz), α (9–14 Hz), β
(15–30 Hz), γL (30–50 Hz), γH (50–100 Hz), and γVH (100–150 Hz). The
resulting band-limited signals were full-wave rectified by taking their
absolute value. They were then resampled to 20 Hz after low-pass
filtering with an eighth order Chebyshev type-1 filter (cutoff = 8 Hz).”/
My LFP data is sampled at 1kHz, and I manually pad with data either side
of the event triggered region of interest. Fieldtrip doesn’t have a
|chebyshev type-1| filter, but would a second order two-pass (aka zero
phase?) butterworth be good enough considering the frequency bands used?
I’m using the following cfg passed to |ft_preprocessing| for the initial
bandpass filtering and rectification:
|freq ={[1 4], [5 8], [9 14], [15 30], [30 50], [50 100], [100 150]};
for j =1:length(freq)
cfg =[];
cfg.padding =0;
cfg.bpfilter ='yes';
cfg.bpfilttype ='but';
cfg.bpfreq = freq{j};
cfg.bpfiltdir ='twopass';
cfg.bpfiltord =2;
cfg.bpinstabilityfix ='reduce';
cfg.rectify ='yes';
bp{j} = ft_preprocessing(cfg,ft);
end
|
As far as I can see in |ft_preprocessing| rectification occurs after
filtering, so this is as specified by Leopold /et al.,/
Then for downsampling/resampling:
|cfg =[];
cfg.padding =0;
cfg.lpfilter ='yes';
cfg.lpfreq =8;
cfg.lpfilttype ='but';
cfg.lpfiltdir ='twopass';
cfg.lpfiltord =8;
cfg.lpinstabilityfix ='reduce';
bp{j} = ft_preprocessing(cfg,bp{j});
cfg =[];
cfg.resample ='yes';
cfg.resamplefs =20;
cfg.detrend ='no';
bp{j} = ft_resampledata(cfg,bp{j});
|
Does this seem a correct translation of this method in Fieldtrip? Are
there any caveats other than the filter differences?
Thanks, Ian
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