[FieldTrip] MATLAB crashes during ft_sourceanalysis
Kirandeep Kaur
kkaur.aiims at gmail.com
Thu Jul 28 16:25:20 CEST 2022
Dear all, this is a query regarding implementation of LCMV beamformer.
I am using ft_sourceanalysis to compute the beamformer virtual channels
and kurtosis for data collected from Elekta Neuromag 306 channels MEG
scanner. However, while scanning the grid (typically ranging from 12,000 -
15,000 points), my MATLAB (R2021a) simply shuts down without any error.
This also typically happens after the function has scanned >11,000 grid
points.
This problem is occurring for roughly 40% of my subjects. The sampling rate
is downsampled to 500Hz, and the duration of continuous MEG record for
which I am computing the beamformer is typically 10-12 minutes. I am using
the reconstructed MRI from Freesurfer (orig.magz) for constructing the head
model. A snapshot of the code I am using is given here :
----------------------------------------------------------------------
%% compute leadfield
cfg = [];
cfg.channel = 'MEG';
cfg.headmodel = headmodel;
cfg.sourcemodel = sourcemodel;
cfg.normalize = 'yes'; % normalisation avoids power bias towards centre of
head
cfg.reducerank = 2;
leadfield = ft_prepare_leadfield(cfg, cov_matrix);
save ('leadfield');
%% %plot svd of covariance matrix
[u,s,v] = svd(cov_matrix.cov);
figure;
semilogy(diag(s),'o-');
savefig (gcf, 'svd_covariance.fig', 'compact');
close all
%% compute the LCMV beamformer
cfg = [];
cfg.method = 'lcmv';
cfg.sourcemodel = leadfield;
cfg.headmodel = headmodel;
cfg.lcmv.keepfilter = 'yes';
cfg.lcmv.fixedori = 'yes'; % project on axis of max variance using SVD
cfg.lcmv.lambda = '5%';
cfg.lcmv.kappa = 69;
cfg.lcmv.projectmom = 'yes'; % project dipole time series in direction of
maximal power
cfg.lcmv.kurtosis = 'yes';
cfg.lcmv.keepmom = 'yes';
source = ft_sourceanalysis(cfg, cov_matrix);
save ('source');
-------------------------------------------------------
Any help regarding this would be very useful since I am not able to find a
solution to this problem.
Kind regards,
Kirandeep Kaur,
Research Fellow, Aston University,
Birmingham, UK
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