[FieldTrip] How to find out dimensions of clusters without using ft_clusterplot
Jan Ostrowski
j.ostrowski at uke.de
Mon Jul 25 17:05:34 CEST 2022
Hello everyone,
I was wondering whether there is a built-in option to get the dimensions
of clusters in time-frequency data after conducting cluster-based
permutation testing using ft_freqstatistics.
In my particular case, one positive cluster can be found that is
significant. The output from ft_freqstatistics looks like this:
prob: [60×40×31 double]
posclusters: [1×32 struct]
posclusterslabelmat: [60×40×31 double]
posdistribution: [1×2000 double]
negclusters: [1×25 struct]
negclusterslabelmat: [60×40×31 double]
negdistribution: [1×2000 double]
cirange: [60×40×31 double]
mask: [60×40×31 logical]
stat: [60×40×31 double]
ref: [60×40×31 double]
dimord: 'chan_freq_time'
freq: [1×40 double]
label: {60×1 cell}
time: [1×31 double]
cfg: [1×1 struct]
I use the following configuration for ft_clusterplot, while my
statistical results are limited to the average of a frequency interval
(so that it has the dimensions 60x1x31):
alpha: 0.0500
parameter: 'stat'
subplotsize: [3 3]
highlightsizeseries: [8 8 8 8 8]
highlightcolorpos: 'green'
highlighcolorneg: 'red'
fontsize: 20
colormap: [200×3 double]
layout: 'easycapM11.lay'
When using ft_clusterplot on this output, only then do I get
information on the time interval. However, there is no log in which is
stated which electrodes are part of the cluster.
Is there any way to obtain that information without running the cluster
plot function, or do I need to extract this information manually?
Appreciate any help on this!
Best,
Jan
--
Jan Ostrowski, M.Sc.
Department of Systems Neuroscience
University Medical Center Hamburg-Eppendorf
Martinistr. 52
Building W34, Room 320b
D-20246 Hamburg, Germany
--
_____________________________________________________________________
Universitätsklinikum Hamburg-Eppendorf; Körperschaft des öffentlichen Rechts; Gerichtsstand: Hamburg | www.uke.de
Vorstandsmitglieder: Prof. Dr. Burkhard Göke (Vorsitzender), Joachim Prölß, Prof. Dr. Blanche Schwappach-Pignataro, Marya Verdel
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