[FieldTrip] Tmegconnebasic Pipeline for Megconnectome/Fieldtrip

[Schoffelen, J.M. (Jan Mathijs)]

Hi Matt,

I believe that Georgios has already answered this question on the HCP mailing list. If there were things unclear, I suggest following up there in order to avoid confusion (and double work).

Best wishes,
Jan-Mathijs


On 13 Sep 2020, at 03:36, Winter, Matthew <mattwint at iu.edu<mailto:mattwint at iu.edu>> wrote:

Hi everyone,

I am trying to do a walk through of the tmegconnebasic pipeline so that I can translate it over into MNE-Python. I can see I need to start with the tmegpreproc files (working memory task) but I am not sure how to get the list of contrasts to actually start the tmegconnebasic pipeline. Would any of you be willing to give me the first few very basic steps to help get me started? I have the 'WU-Minn HCP 1200 Subjects Data Release Reference Manual,' and am trying to follow the “Main Steps” on page 186, I just can’t seem to get the function hcp_tmegconnebasic_contrasts.m to give me anything but errors, because I have no idea what it needs as input and if there are other steps that need to be done first.

I should add that I am working off of my school's server which already has all the HCP data downloaded.

Thank you for any advice or resources you can offer,
Matt


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