[FieldTrip] Error: Could not determine the parametric critical value for clustering
Paul Dhami
pdhami06 at gmail.com
Wed Jan 30 14:56:29 CET 2019
Dear Stephen,
apologizes for not including that information.
The data structure (e.g. ControlsSubj_sp_lpfc_freq) was created using:
% frequency analysis
cfg = [];
cfg.output = 'powandcsd';
cfg.method = 'mtmconvol';
cfg.foi = 2:1:60; %40
cfg.t_ftimwin = 2 ./ cfg.foi; %length of the sliding time window
in seconds
cfg.tapsmofrq = 0.4 *cfg.foi; % smoothing increases with increase
in freq
cfg.toi = -1:0.01:1; % -0.4:0.01:0.4
dataSPfreq = ft_freqanalysis(cfg, dataSPfreq);
%baseline correction
cfg = [];
cfg.baseline = [-1 -0.1]; %-0.4
cfg.baselinetype = 'db';
dataSPfreq = ft_freqbaseline(cfg, dataSPfreq);
The call to freqstatistics is as follows:
cfg = [];
cfg.method = 'template'; % using template method
cfg.template = 'Control_neighb.mat'; % specify type of template
cfg.layout = 'quickcap64.mat'; % specify layout of sensors
cfg.feedback = 'yes'; % show a neighbour plot
neighbours = ft_prepare_neighbours(cfg, MDDSubj_sp_lpfc_freq{1});
cfg.channel = 'all';
cfg.latency = [0.01 1] ;
cfg.frequency = 'all' ;
cfg.parameter = 'powspctrm';
cfg.neighbours = neighbours; % defined as above
cfg.method = 'montecarlo';
cfg.statistic = 'ft_statfun_indepsamplesT';
cfg.correcttail = 'alpha';
cfg.correctm = 'cluster';
%cfg.alpha = 0.05
cfg.numrandomization = 2000;
cfg.minnbchan = 2;
cfg.spmversion = 'spm12';
cfg.fsample = 1000;
Nsub = length(ControlsSubj_sp_lpfc_freq) +
length(MDDSubj_sp_lpfc_freq) ;
cfg.design = [];
cfg.design(1,1:Nsub) = [ones(1, length(ControlsSubj_sp_lpfc_freq))
(2*ones(1, length(MDDSubj_sp_lpfc_freq)))];
cfg.ivar = 1;
% Resulting Cluster Corrected Permutation test
% !!order of structures must follow that specified in the design matrix!!
MDD_vs_Controls_sp_lpfc_freq_mcc =
ft_freqstatistics(cfg,ControlsSubj_sp_lpfc_freq{:},
MDDSubj_sp_lpfc_freq{:});
It is after calling ft_freqstatistics that I get the error "Could not
determine the parametric critical value for clustering".
Any help would be greatly appreciated.
Thank you,
Paul
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