[FieldTrip] wPLI values higher than normal coherence
daniel.strahnen at uni-ulm.de
daniel.strahnen at uni-ulm.de
Tue Dec 17 11:57:24 CET 2019
Dear FieldTrip - Community,
I am using the wPLI routine from the FieldTrip toolbox to detect true
connectivity.
However, I found that the wPLI values that I obtain are even higher than the
coherence values and the maximum often goes up to 1.
Based on the theory behind the two measures I would rather expect the
opposite.
Has anybody stumbled upon the same phenomenon?
Here is the code I used, Output_data contains 7 channels (samples x
channels) and it is a continuous recording over 10 minutes which is
truncated into 4 second trials:
data.label = {'Ref'; 'PFCd'; 'PFCu'; 'dHC'; 'vHCu'; 'vHCd'; 'MD'};
data.fsample = 1000;
j = 1;
for k = 1:20
data.time{k} = j:(k*30000);
data.trial{k} = Output_data((j:(k*30000)),:)';
j = k*30000 + 1;
end
cfg.length = 4;
cfg.overlap = 0.5;
[data] = ft_redefinetrial(cfg, data);
%% Freqanalysis to obtain the cross spectral density
cfg_freq = [];
cfg_freq.method = 'mtmfft';
cfg_freq.output = 'fourier';
cfg_freq.keeptrials = 'yes';
cfg_freq.taper = 'dpss';
cfg_freq.tapsmofrq = 2;
cfg_freq.foilim = [0 48];
cfg_freq.pad = 'nextpow2';
freq_data = ft_freqanalysis(cfg_freq, data);
%% coh analysis
cfg_conn = [];
cfg_conn.method = 'coh';
coh_str = ft_connectivityanalysis(cfg_conn, freq_data);
coh_str = ft_checkdata(coh_str, 'cmbrepresentation',
'full','datatype','freq');
%% wPLI analysis
cfg_conn = [];
cfg_conn.method = 'wpli_debiased';
wpli_str = ft_connectivityanalysis(cfg_conn, freq_data);
wpli_str = ft_checkdata(wpli_str, 'cmbrepresentation',
'full','datatype','freq');
Thank you very much and best regards
Daniel
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