[FieldTrip] ft_freqanalysis after zero-padding
Carolina Ogawa
carolyogawa at gmail.com
Fri Aug 30 16:50:27 CEST 2019
Dear community,
I zero-padded my already epoched data using the following code:
trl = 1;
padtype = 'zero';
padlength = 500; % n. of samples to be padded before and after the
data
zeroPadData = cell(1,size(data_SL.trial,2));
while trl <= size(data_SL.trial,2)
zeroPadData{trl} = ft_preproc_padding(data_SL.trial{trl}, padtype,
padlength);
trl = trl + 1;
end
data_SL.trial = zeroPadData;
clear zeroPadData; clear trl; clear padlength; clear padtype;
After zero-padding, I'm trying to run "ft_frequanalysis" using the
following parameters:
cfg = [];
cfg.output = 'pow';
cfg.method = 'mtmconvol';
cfg.taper = 'hanning';
cfg.foi = 4:1:50;
cfg.t_ftimwin = ones(length(cfg.foi),1).*.2; % length of time
window = 0.2 sec
cfg.toi = -1:0.05:1.5; % time window "slides" from -1.0
to 1.5 sec in steps of 0.05 sec
TFRhann = ft_freqanalysis(cfg, data_SL);
However, I get the following error:
Error using ft_datatype_raw (line 83)
inconsistent number of samples in trial 1
Error in ft_checkdata (line 268)
data = ft_datatype_raw(data, 'hassampleinfo',
hassampleinfo);
Error in ft_freqanalysis (line 212)
data = ft_checkdata(data, 'datatype', {'raw',
'raw+comp', 'mvar'}, 'feedback', cfg.feedback,
'hassampleinfo', 'yes');
Before the zero-padding, each trial had 1500 data points, whereas after
zero-padding, each trial got extra 1000 zeros (500 zeros at the beginning
and 500 zeros at the end of the trial), totaling 2500 data points.
I'm not sure whether I'm zero-padding the data correctly. The
"ft_preproc_padding" function seems not to accept the whole data structure
("data_SL"), but just a specific part of it ("data_SL.trial"), so that the
only way that I've found to make it work was as shown above. Consequently,
the other parts of the data structure are not updated, creating
inconsistencies (which I suspect are causing the error).
Can anyone help me with this?
Thank you all in advance!
Best,
Carolina Ogawa
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