[FieldTrip] Regarding Tutorial: Preprocessing and averaging of multi-channel NIRS data

[Sunny p]

Hello Sophie,

Once this tutorial is fully developed, Can we use this for OCTAMON (
https://www.artinis.com/octamon/)  ?

Thanks for your understanding and support.

Best Regards,
Sunny

On Wed, Jul 25, 2018 at 12:35 PM, Sunny p <sunnypitt1965 at gmail.com> wrote:

> Hello Sophie,
>
> Thanks a lot for providing this code. I am making some changes that are
> useful. Can you please inform what is the variable 'data_func' in the code
> relates to. This is the last undefined variable in code.
>
> Thanks for your understanding and support.
>
> Best Regards,
> Sunny
>
> On Wed, Jul 25, 2018 at 8:22 AM, Sunny p <sunnypitt1965 at gmail.com> wrote:
>
>> Hello Sophie,
>>
>> Thanks a lot for your clarification. This is very useful.
>>
>> Sunny
>>
>>
>> On Wednesday, July 25, 2018, Arana, S.L. (Sophie) <S.Arana at donders.ru.nl>
>> wrote:
>>
>>> Dear Sunny,
>>>
>>> the multi-channel NIRS data tutorial is currently under construction and
>>> will hopefully be fully available in a couple of weeks. Until then, there
>>> might still be some inconsistencies such as the one you have encountered.
>>>
>>> The variable you refer to is indeed missing. It refers to a filtered
>>> version of the data, and you can created it by running the following code
>>> before the epoching.
>>>
>>> cfg                 = [];
>>>
>>> cfg.hpfilter        = 'yes';
>>>
>>> cfg.hpfreq          = 0.01;
>>>
>>> data_flt            = ft_preprocessing(cfg,data_down);
>>>
>>>
>>> This should help you to continue with the tutorial, but please do keep
>>> in mind that we are currently working on it and you might encounter some
>>> other inconsistencies still later on.
>>>
>>>
>>> Best,
>>>
>>> Sophie
>>>
>>> ------------------------------
>>> *From:* fieldtrip [fieldtrip-bounces at science.ru.nl] on behalf of Sunny
>>> p [sunnypitt1965 at gmail.com]
>>> *Sent:* Tuesday, July 24, 2018 9:24 PM
>>> *To:* fieldtrip at science.ru.nl
>>> *Subject:* [FieldTrip] Regarding Tutorial: Preprocessing and averaging
>>> of multi-channel NIRS data
>>>
>>> Hello All Good Day,
>>>
>>> Hope you are doing fine,
>>>
>>> Thanks a lot for providing with fieldtrip which is really useful to
>>> analyze fNIRS data. I have an issue in the "Preprocessing and averaging of
>>> multi-channel NIRS data" tutorial. Can you please help me with this issue?
>>>
>>> Issue: In the  "Preprocessing and averaging of multi-channel NIRS data"
>>> tutorial " http://www.fieldtriptoolbox.org/tutorial/nirs_multichannel
>>>
>>> The "Epoch" section consists of a variable "data_flt.fsample" where
>>> "data_flt" variable is not defined. Can you please inform what is this
>>> variable related to? as this is needed to complete my analysis.
>>>
>>>
>>>
>>>
>>> Thanks for your understanding and support
>>>
>>> Best Regards,
>>> Sunny
>>>
>>>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20180727/ff499f57/attachment-0002.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image.png
Type: image/png
Size: 4228 bytes
Desc: not available
URL: <http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20180727/ff499f57/attachment-0002.png>