[FieldTrip] Design matrix for depsamplesregrT within subject
Antonius Wiehler
antonius.wiehler at gmail.com
Fri Dec 21 21:01:53 CET 2018
Hi,
I have two questions about correctly specifying the design matrix for
ft_freqstatistics.
It is a within-subject experimental design, where I want to test the
(linear) effect of time. So, per subject, I have 5 consecutive sessions,
with ~170 trials each. In the time-frequency domain, I would like to test
if power is changing with session. For group statistics, I did the
following:
1) Compute per subject and session the mean with ft_freqdescriptives,
because I don't have enough memory to work with single trial data.
2) Testing the session effect with a dependent samples regression
% parameters for test
cfg = [];
cfg.parameter = 'powspctrm';
cfg.latency = 'all';
cfg.method = 'montecarlo';
cfg.statistic = 'depsamplesregrT';
cfg.correcttail = 'prob';
cfg.tail = 0;
cfg.alpha = 0.05;
cfg.numrandomization = 500;
cfg.correctm = 'cluster';
cfg.clusteralpha = 0.05;
cfg.clusterstatistic = 'maxsum';
cfg.clusterthreshold = 'nonparametric_common'; % method for
single-sample threshold
cfg.clustertail = 0;
cfg.minnbchan = 3;
cfg.wcm_weight = 1;
%design matrix
design = zeros(2, n_sessions*n_subjects);
design(1, :) = repmat(1:n_subjects, 1, n_sessions); % subject
design(2, :) = repelem(1:n_sessions, n_subjects); % session
cfg.design = design;
cfg.uvar = 1; % which row is the unit variable, here
subjects
cfg.ivar = 2; % which row is the independent variable,
here sessions
%generate stats from two cell arrays of full fieldtrip "data" structures
stat = ft_freqstatistics(cfg, session1{:}, session2{:}, session3{:},
session4{:}, session5{:});
This leads to a significant cluster.
Now, I would like to test if the effect is significant in every single
subject. So I thought I would just set n_subjects to 1 and could use the
same approach. However, I get an error saying that I need as least two
subjects (uvar).
I'm wondering what is the right way to set this up. An indepsamplesregrT is
running fine, but I think the data is still depended, as it is from one
subject.
Second, I would like to test the conjunction, i.e. finding a cluster that
is overlapping between subjects and significant within *every* single
subject. How could I do this in Fieldtrip?
Thanks a lot for your help in advance!
Best,
Antonius
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