[FieldTrip] Fwd: A Simple question about the template of brain anatomy Used in Field Trip

[Schoffelen, J.M. (Jan Mathijs)]

Dear GuangYe Li,

Please use the fieldtrip discussion list for this type of questions in the future.

I cannot reproduce your problem. Please check whether you are using a sufficiently up-to-date version of FieldTrip. In the past (but that is already a while ago) there was an issue with the alignment, which has long since been fixed.

Best wishes,

Jan-Mathijs


J.M.Schoffelen, MD PhD
Senior Researcher, VIDI-fellow - PI, language in interaction
Telephone: +31-24-3614793
Physical location: room 00.028
Donders Centre for Cognitive Neuroimaging, Nijmegen, The Netherlands




Begin forwarded message:

From: GuangYe LI <liguangye.hust at gmail.com<mailto:liguangye.hust at gmail.com>>
Subject: A Simple question about the template of brain anatomy Used in Field Trip
Date: 16 June 2017 at 23:11:31 GMT+3
To: <robert.oostenveld at donders.ru.nl<mailto:robert.oostenveld at donders.ru.nl>>, <jan.schoffelen at donders.ru.nl<mailto:jan.schoffelen at donders.ru.nl>>

Hi Robert & Jan:

Hope you everything goes well and sorry for any inconvenience, I am writing this mail to ask you a question about the brain model template you provided in FieldTrip.
Because I go to the template/anatomy/ folder of fieldtrip, and generate a brain model using the image file (single_subj_T1_1mm.nii) you provide in that folder in Freesurfer, and then compare the brain model provided in the same folder: surface_pial_both.mat .  What I found is that these two brain model is not in the same coordinate origins (Please see the attachment for details).  I think these two models shall be in the same coordinate, so that the people can project the electrodes correctly.
So if you don't mind, could you please help to tell me that which software you use and which file you use to generate the surface_pial_both.mat ?  so that I can re-run the segmentation.
It will be highly appreciated if you can give me a  reply.


Thanks & Regards
GuangYe Li
Email: liguangye.hust at gmail.com<mailto:liguangye.hust at gmail.com>
Institute of Robotics
Shanghai Jiao Tong University | Shanghai | China




-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20170617/4959ac0d/attachment-0001.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Surface_pial_Both and single_subj_T1_1mm.pdf
Type: application/pdf
Size: 201612 bytes
Desc: Surface_pial_Both and single_subj_T1_1mm.pdf
URL: <http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20170617/4959ac0d/attachment-0001.pdf>