[FieldTrip] Synchronization likelihood

[Zink, Nicolas]

Hi Juan,

thank you very much for your quick respons ! I will go for the Matlab based implementation from the Hermes toolbox, because the function H_methods_SL.m is a “Synchronization Likelihood Stand-Alone Calculator”. I will keep you updated on how to successfully implement it in any Fieldtrip pipeline.

Cheers
Nico
Nicolas Zink
wissenschaftlicher Mitarbeiter
Universitätsklinikum Carl Gustav Carus
Klinik für Kinder- und Jugendpsychiatrie und -psychotherapie
Schubertstraße 42
01307 Dresden
Tel. +49 (0)351 458-2303

Universitätsklinikum Carl Gustav Carus
an der Technischen Universität Dresden
Anstalt des öffentlichen Rechts des Freistaates Sachsen
Fetscherstraße 74, 01307 Dresden
http://www.uniklinikum-dresden.de<http://www.uniklinikum-dresden.de/>
Vorstand: Prof. Dr. med. D. M. Albrecht (Sprecher), Wilfried E. B. Winzer
Vorsitzender des Aufsichtsrates: Prof. Dr. med. Peter C. Scriba
USt.-IDNr.: DE 140 135 217, St.-Nr.: 203 145 03113

From: fieldtrip-bounces at science.ru.nl [mailto:fieldtrip-bounces at science.ru.nl] On Behalf Of Juan
Sent: Wednesday, February 08, 2017 11:01 AM
To: FieldTrip discussion list
Cc: s.rombetto at cib.na.cnr.it
Subject: Re: [FieldTrip] Synchronization likelihood

Hi,

If you are interested in Synchronization Likelihood I would read the work you mention and also Montez et al, Neuroimage 2006. It would also be very useful to read Pereda et al, Progress in Neurobiology, 2005 for a general overview of different indices.

Implementations, there are a few, between them...

The authors have a Java based implementation, here: https://home.kpn.nl/stam7883/brainwave.html

For a Matlab based implementation, I would start looking here, http://hermes.ctb.upm.es/, In the toolbox there is a function called: H_methods_SL.m with an implementation.

I think it is also implemented as part of the Neurophysiological Biomarker Toolbox, here: http://www.nbtwiki.net/

A C based, although accessible from Matlab, here: http://link.springer.com/article/10.1007%2Fs12021-014-9251-4

Best,

Juan

On Wed, Feb 8, 2017 at 10:24 AM, Zink, Nicolas <Nicolas.Zink at uniklinikum-dresden.de<mailto:Nicolas.Zink at uniklinikum-dresden.de>> wrote:
Dear Fieltrip community,

I would also like to implement the synchronization likelihood algorithm in Matlab, in order to analyze data with Fieldtrip. It is based on a paper from Stam and van Dijk (2002) http://dl.acm.org/citation.cfm?id=604702. Has anyone done this since?

I am referring to a previous message by Sara Rombetto from 2013 in this mailing list.

Cheers to the Fieldtrip community and have a good day!
Nico
Nicolas Zink
wissenschaftlicher Mitarbeiter
Universitätsklinikum Carl Gustav Carus
Klinik für Kinder- und Jugendpsychiatrie und -psychotherapie
Schubertstraße 42
01307 Dresden
Tel. +49 (0)351 458-2303<tel:+49%20351%204582303>

Universitätsklinikum Carl Gustav Carus
an der Technischen Universität Dresden
Anstalt des öffentlichen Rechts des Freistaates Sachsen
Fetscherstraße 74, 01307 Dresden
http://www.uniklinikum-dresden.de<http://www.uniklinikum-dresden.de/>
Vorstand: Prof. Dr. med. D. M. Albrecht (Sprecher), Wilfried E. B. Winzer
Vorsitzender des Aufsichtsrates: Prof. Dr. med. Peter C. Scriba
USt.-IDNr.: DE 140 135 217, St.-Nr.: 203 145 03113


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