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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Hi Juan,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">thank you very much for your quick respons ! I will go for the Matlab based implementation from the Hermes toolbox, because the function
<i>H_methods_SL.m</i> is a “Synchronization Likelihood Stand-Alone Calculator”. I will keep you updated on how to successfully implement it in any Fieldtrip pipeline.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Cheers<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Nico<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D">Nicolas Zink<br>
wissenschaftlicher Mitarbeiter<br>
</span><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black;background:white">Universitätsklinikum Carl Gustav Carus</span><span style="color:black"><br>
</span><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black;background:white">Klinik für Kinder- und Jugendpsychiatrie und -psychotherapie</span><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black"><br>
<span style="background:white">Schubertstraße 42</span><br>
<span style="background:white">01307 Dresden</span></span><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D"><br>
Tel. +49 (0)351 458-2303<br>
<br>
Universitätsklinikum Carl Gustav Carus<br>
an der Technischen Universität Dresden<br>
Anstalt des öffentlichen Rechts des Freistaates Sachsen<br>
Fetscherstraße 74, 01307 Dresden<br>
<a href="http://www.uniklinikum-dresden.de/">http://www.uniklinikum-dresden.de</a><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:7.5pt;font-family:"Arial","sans-serif";color:gray">Vorstand: Prof. Dr. med. D. M. Albrecht (Sprecher), Wilfried E. B. Winzer<br>
Vorsitzender des Aufsichtsrates: Prof. Dr. med. Peter C. Scriba<br>
</span><span style="font-size:8.0pt;font-family:"Arial","sans-serif";color:gray">USt.-IDNr.: DE 140 135 217, St.-Nr.: 203 145 03113</span><span style="color:#1F497D"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> fieldtrip-bounces@science.ru.nl [mailto:fieldtrip-bounces@science.ru.nl]
<b>On Behalf Of </b>Juan<br>
<b>Sent:</b> Wednesday, February 08, 2017 11:01 AM<br>
<b>To:</b> FieldTrip discussion list<br>
<b>Cc:</b> s.rombetto@cib.na.cnr.it<br>
<b>Subject:</b> Re: [FieldTrip] Synchronization likelihood<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-family:"Tahoma","sans-serif";color:#333333">Hi, <o:p></o:p></span></p>
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If you are interested in Synchronization Likelihood I would read the work you mention and also Montez et al, Neuroimage 2006. It would also be very useful to read Pereda et al, Progress in Neurobiology, 2005 for a general overview of different indices.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Implementations, there are a few, between them...<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">The authors have a Java based implementation, here: <a href="https://home.kpn.nl/stam7883/brainwave.html" target="_blank">https://home.kpn.nl/stam7883/brainwave.html</a><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">For a Matlab based implement<span style="font-family:"Tahoma","sans-serif";color:#333333">ation, I would start looking here, <a href="http://hermes.ctb.upm.es/" target="_blank">http://hermes.ctb.upm.es/</a>, In the toolbox there is a function
called: H_methods_SL.m with an implementation.</span><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-family:"Tahoma","sans-serif";color:#333333">I think it is also implemented as part of the Neurophysiological Biomarker Toolbox, here: <a href="http://www.nbtwiki.net/" target="_blank">http://www.nbtwiki.net/</a></span><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">A C based, although accessible from Matlab, here: <a href="http://link.springer.com/article/10.1007%2Fs12021-014-9251-4" target="_blank">http://link.springer.com/article/10.1007%2Fs12021-014-9251-4</a><o:p></o:p></p>
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<p class="MsoNormal">Best,<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="color:#999999">Juan</span><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On Wed, Feb 8, 2017 at 10:24 AM, Zink, Nicolas <<a href="mailto:Nicolas.Zink@uniklinikum-dresden.de" target="_blank">Nicolas.Zink@uniklinikum-dresden.de</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Dear Fieltrip community,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US">I would also like to implement the
<i>synchronization likelihood</i> algorithm in Matlab, in order to analyze data with Fieldtrip. It is based on a paper from Stam and van Dijk (2002)
<a href="http://dl.acm.org/citation.cfm?id=604702" target="_blank">http://dl.acm.org/citation.cfm?id=604702</a>. Has anyone done this since?</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US">I am referring to a previous message by Sara Rombetto from 2013 in this mailing list.</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US">Cheers to the Fieldtrip community and have a good day!</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US">Nico</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">Nicolas Zink<br>
wissenschaftlicher Mitarbeiter<br>
<span style="color:black;background:white">Universitätsklinikum Carl Gustav Carus</span></span><span style="color:black"><br>
</span><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black;background:white">Klinik für Kinder- und Jugendpsychiatrie und -psychotherapie</span><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black"><br>
<span style="background:white">Schubertstraße 42</span><br>
<span style="background:white">01307 Dresden</span></span><span style="font-size:10.0pt;font-family:"Arial","sans-serif""><br>
Tel. <a href="tel:+49%20351%204582303" target="_blank">+49 (0)351 458-2303</a><br>
<br>
Universitätsklinikum Carl Gustav Carus<br>
an der Technischen Universität Dresden<br>
Anstalt des öffentlichen Rechts des Freistaates Sachsen<br>
Fetscherstraße 74, 01307 Dresden<br>
<a href="http://www.uniklinikum-dresden.de/" target="_blank">http://www.uniklinikum-dresden.de</a></span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:7.5pt;font-family:"Arial","sans-serif";color:gray">Vorstand: Prof. Dr. med. D. M. Albrecht (Sprecher), Wilfried E. B. Winzer<br>
Vorsitzender des Aufsichtsrates: Prof. Dr. med. Peter C. Scriba<br>
</span><span style="font-size:8.0pt;font-family:"Arial","sans-serif";color:gray">USt.-IDNr.: DE 140 135 217, St.-Nr.: 203 145 03113</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<a href="https://mailman.science.ru.nl/mailman/listinfo/fieldtrip" target="_blank">https://mailman.science.ru.nl/mailman/listinfo/fieldtrip</a><o:p></o:p></p>
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