[FieldTrip] Urgent: Error in Source Statistics, Group level
Chaitanya Srinivas
chaitanya.pro at gmail.com
Sun Jan 26 08:46:24 CET 2014
Dear fieldtrip users,
I would like to do sourcestatistics on a group level with eeg data. I have a
pre and post intervention measurement for each of my 10 subjects
. After source reconstruction using an DICS beamformer
and volume normalization, I calculated the sourcegrandaverage for the pre and
post condition and i have avg.pow for each subject.
However, when I use the grandaverage results in ft_sourcestatistics in the
configuration shown below and plot the result I just get a blank anatomical
mri. It only runs with cfg.parameter="pow" .I tried with cfg.parameter
= 'avg.pow' it doesnt run.
Do I have to set any additional parameters or am I making some mistake?
cfg=[];
cfg.dim = grandAVGsourcePre.dim;
cfg.method = 'montecarlo';
cfg.statistic = 'depsamplesT';
cfg.parameter = 'pow';
cfg.correctm = 'cluster';
cfg.numrandomization = 1000;
cfg.alpha = 0.05;
cfg.tail = 0;
nsubj=length(sourcePre.trial);
cfg.design(1,:) = [1:nsubj 1:nsubj];
cfg.design(2,:) = [ones(1,nsubj) ones(1,nsubj)*2];
cfg.uvar = 1;
cfg.ivar = 2;
stat = ft_sourcestatistics(cfg, grandAVGsourcePre, grandAVGsourcePost);
*and next interpolation*
cfg = [];
cfg.voxelcoord = 'no';
cfg.parameter = 'mask';
cfg.interpmethod = 'nearest';
cfg.coordsys = 'mni';
mask = ft_sourceinterpolate(cfg,stat,mri);
statplot.mask = mask.mask;
*and then for plotting*
cfg = [];
cfg.method = 'slice';
cfg.funparameter = 'stat';
cfg.maskparameter = 'mask';
cfg.funcolorlim = [-0.1 0.1];
cfg.opacitylim = [-0.1 0.1];
figure
ft_sourceplot(cfg, statplot);
*===============================================*
*[image: Inline image 1]*
*Best Regards*
*Chaitanya Srinivas Lanka Wiss. Mitarbeiter
*
*PhD StudentFunctional and Restorative Neurosurgery Neural Information
ProcessingNeurosurgical University Hospital*
* Graduate Training Center for Neuroscience Eberhard Karls
University Eberhard Karls University
**Otfried-Mueller-Str.45
Österbergstr. 3*
* D-72076 Tuebingen **D-72074 Tuebingen*
*Mobile Phone Number : +49-176-79035731*
*===============================================*
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