[FieldTrip] source statistics with ROI yields NaN clusters
Vitória Magalhães Piai
vitoria.piai at gmail.com
Wed Oct 16 11:19:17 CEST 2013
Dear all,
I'm trying to run ft_sourcestatistics with a specified ROI. It's data
(MNEs) averaged over time.
If I run ft_sourcestatistics without an ROI, I get a cluster with prob =
.178. It looks like this (figure attached), where I masked using the
t-values.
Since I'm dealing with an N400-like component, I've got good reasons to
expect the effect to be localised (mainly) to left temporal areas.
So I tried adding this to my cfg:
cfgst.atlas = 'aal\ROI_MNI_V4.nii';
cfgst.roi = {'Temporal_Mid_L' 'Temporal_Sup_L' 'Temporal_Inf_L' };
cfgst.avgoverroi = 'yes';
cfgst.hemisphere = 'left';
cfgst.inputcoord = 'mni' ;
stat = ft_sourcestatistics(cfgst, iRel{:}, iIde{:});
If cfgst.avgoverroi == 'yes'; I get the following error:
??? In an assignment A(:) = B, the number of elements in A and B
must be the same.
Error in ==> clusterstat at 187
tmp(cfg.inside) = postailobs;
Error in ==> ft_statistics_montecarlo at 326
[stat, cfg] = clusterstat(cfg, statrand, statobs,'issource',issource);
Error in ==> statistics_wrapper at 298
[stat, cfg] = statmethod(cfg, dat, design, 'issource',issource);
Error in ==> ft_sourcestatistics at 107
[stat, cfg] = statistics_wrapper(cfg, varargin{:});
If cfgst.avgoverroi == 'no';
ft outputs "found positive clusters in observed data" and
stat.posclusters/negclusters is only NaN. This is regardless of whether
cfgst.roi is one label or a cell array.
Does anyone know what I'm doing wrong?
I've been completely stuck on source statistics for these MNEs for days,
so /any/ help would be highly appreciated, even if it is to suggest
another way to do the stats!
Thanks a lot, Vitória
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