[FieldTrip] 2D surface spline interpolation

ingenieur eniso ingenieureniso at gmail.com
Thu Jul 18 17:02:34 CEST 2013


Hi ,
I use the splint.m function to implement the spherical spline
interpolation. But an error is occured:
??? Error using ==> rdivide
Matrix dimensions must agree.

Error in ==> splint at 58
elc1 = elc1 ./ repmat(sqrt(sum(elc1.^2,2)), 1, 3);


Error in ==> eeg_interp_sph_spline_test at 50
     [V2, L2, L1] = splint(elc1, V, elc2)

I have written following program in Matlab

 elc1=[x y z]';
    elc2=[0.430   0.050   -0.010]';

     [V2, L2, L1] = splint(elc1, V, elc2)

with
[x y z]=[-0.0176    0.0907    0.0071
    0.0024    0.0924    0.0076
    0.0284    0.0879    0.0075
   -0.0085    0.0903    0.0190
    0.0153    0.0895    0.0189
   -0.0391    0.0836    0.0089
   -0.0156    0.0868    0.0286
    0.0299    0.0823    0.0305
    0.0559    0.0735    0.0080
   -0.0329    0.0805    0.0321
   -0.0043    0.0789    0.0485
    0.0155    0.0785    0.0468
    0.0462    0.0726    0.0344
   -0.0618    0.0683    0.0105
   -0.0509    0.0719    0.0289
   -0.0418    0.0694    0.0451
   -0.0200    0.0725    0.0542
    0.0040    0.0690    0.0618
    0.0332    0.0657    0.0563
    0.0507    0.0593    0.0501
    0.0674    0.0552    0.0315
    0.0770    0.0510    0.0080
   -0.0651    0.0617    0.0234
   -0.0560    0.0608    0.0420
   -0.0406    0.0598    0.0580
   -0.0080    0.0579    0.0720
    0.0196    0.0538    0.0729
    0.0444    0.0515    0.0631
    0.0678    0.0422    0.0471
    0.0803    0.0412    0.0213
   -0.0738    0.0546   -0.0128
   -0.0782    0.0496    0.0047
   -0.0692    0.0506    0.0353
   -0.0518    0.0466    0.0611
   -0.0288    0.0444    0.0761
    0.0018    0.0412    0.0830
    0.0296    0.0370    0.0797
    0.0582    0.0294    0.0659
    0.0799    0.0258    0.0392
    0.0902    0.0207    0.0049
    0.0842    0.0364   -0.0135
   -0.0831    0.0366    0.0188
   -0.0709    0.0332    0.0497
   -0.0493    0.0303    0.0724
   -0.0187    0.0239    0.0876
    0.0157    0.0212    0.0889
    0.0488    0.0165    0.0771
    0.0758    0.0093    0.0526
    0.0905    0.0016    0.0200
   -0.0846    0.0327   -0.0191
   -0.0914    0.0153   -0.0017
   -0.0851    0.0124    0.0345
   -0.0648    0.0150    0.0646
   -0.0401    0.0047    0.0834
    0.0295   -0.0054    0.0877
    0.0596   -0.0112    0.0701
    0.0821   -0.0158    0.0400
    0.0916   -0.0140    0.0023
    0.0909    0.0050   -0.0172
   -0.0913   -0.0021    0.0158
   -0.0805   -0.0014    0.0459
   -0.0562   -0.0090    0.0732
   -0.0215   -0.0170    0.0885
    0.0119   -0.0205    0.0896
    0.0468   -0.0289    0.0746
    0.0717   -0.0317    0.0494
    0.0852   -0.0321    0.0173
   -0.0856   -0.0313   -0.0167
   -0.0906   -0.0195   -0.0002
   -0.0861   -0.0199    0.0279
   -0.0681   -0.0230    0.0585
   -0.0375   -0.0303    0.0791
   -0.0029   -0.0388    0.0841
    0.0277   -0.0432    0.0772
    0.0560   -0.0450    0.0586
    0.0738   -0.0459    0.0322
    0.0801   -0.0466    0.0005
    0.0692   -0.0591   -0.0177
   -0.0828   -0.0397    0.0127
   -0.0751   -0.0381    0.0389
   -0.0556   -0.0426    0.0607
   -0.0218   -0.0555    0.0709
    0.0119   -0.0587    0.0707
    0.0402   -0.0598    0.0583
    0.0588   -0.0606    0.0383
    0.0698   -0.0602    0.0099
   -0.0681   -0.0592   -0.0211
   -0.0770   -0.0512   -0.0056
   -0.0725   -0.0542    0.0200
   -0.0626   -0.0544    0.0415
   -0.0372   -0.0663    0.0531
   -0.0075   -0.0692    0.0613
    0.0157   -0.0732    0.0547
    0.0438   -0.0705    0.0413
    0.0567   -0.0703    0.0209
    0.0630   -0.0678   -0.0043
    0.0545   -0.0723   -0.0201
   -0.0558   -0.0683    0.0284
   -0.0226   -0.0794    0.0421
    0.0036   -0.0823    0.0425
    0.0386   -0.0810    0.0235
   -0.0654   -0.0655    0.0051
   -0.0452   -0.0802    0.0113
   -0.0322   -0.0824    0.0276
   -0.0078   -0.0884    0.0267
    0.0175   -0.0876    0.0247
    0.0282   -0.0877    0.0104
    0.0510   -0.0772    0.0057
   -0.0193   -0.0900    0.0110
    0.0060   -0.0919    0.0105
   -0.0556   -0.0736   -0.0089
   -0.0287   -0.0879   -0.0060
   -0.0054   -0.0924   -0.0056
    0.0148   -0.0913   -0.0057
    0.0422   -0.0820   -0.0095
   -0.0168   -0.0899   -0.0149
    0.0059   -0.0913   -0.0151
   -0.0258   -0.0854   -0.0253
   -0.0063   -0.0889   -0.0255
    0.0142   -0.0880   -0.0254
   -0.0398    0.0828   -0.0126
   -0.0116    0.0913   -0.0111
    0.0115    0.0914   -0.0103
    0.0378    0.0841   -0.0101]


V =

    [3.3540
    1.9345
    0.5927
    2.6217
    1.3858
    5.1010
    3.2264
    0.3127
   -1.2031
    4.8916
    2.2626
    0.7324
   -0.8725
    8.8664
    7.1630
    5.9588
    3.6880
    1.7445
   -0.4065
   -1.4554
   -2.5648
   -2.8607
    9.7859
    8.1602
    5.9181
    2.3645
    0.3716
   -1.0117
   -2.4332
   -3.0173
    9.7933
   11.8346
   10.4268
    7.4601
    4.5098
    1.8013
   -0.3755
   -1.7671
   -2.9153
   -3.5252
   -3.2862
   13.3333
   10.0548
    6.8787
    3.4798
    0.8774
   -0.9168
   -2.3297
   -3.1422
   11.8833
   13.2409
   11.6124
    8.3419
    4.8045
    0.6147
   -0.8466
   -2.0623
   -2.8388
   -3.2469
   12.1843
    9.6097
    6.2738
    3.3943
    1.4797
    0.0743
   -1.2483
   -2.0240
    8.5136
   10.3840
    9.7096
    7.3371
    4.4194
    2.6834
    1.0785
   -0.2747
   -1.3383
   -1.4970
   -0.4476
    8.3757
    7.6361
    5.7288
    3.4908
    1.8043
    0.7450
   -0.1646
   -0.7976
    6.1441
    7.2345
    7.0914
    6.2035
    4.1770
    2.5408
    1.8116
    0.3820
   -0.1287
   -0.4707
    0.2793
    5.3026
    3.5360
    2.1660
    0.7409
    6.1342
    4.4963
    3.6572
    2.5199
    1.7607
    1.3430
    0.4600
    3.2784
    2.1011
    5.2801
    3.5401
    2.6195
    2.0038
    0.7776
    3.1047
    2.2821
    3.3528
    2.6710
    1.9100
    5.1250
    2.9475
    1.6662
    0.1915]

I haven't found a solution though. So, what is wrong?

  Thanks a lot in advance!

Best,

ahmed




2013/7/17 ingenieur eniso <ingenieureniso at gmail.com>

> Hi Jörn and jan-mathijs,
>
>
> thank you very much for help.
>
> All the best
> Ahmed
>
>
> 2013/7/16 jan-mathijs schoffelen <jan.schoffelen at donders.ru.nl>
>
>> Hi Ahmed,
>>
>> For the visualization of sensor topographies, fieldtrip relies on the
>> 'griddata' function from matlab. You can type 'doc griddata' on the matlab
>> command line for more information. Note that this is not a function that is
>> specific to fieldtrip.
>>
>> For actual interpolation of data, FieldTrip has a ft_channelrepair
>> function, which implements (among others) a spherical spline interpolation.
>>
>>
>> Best wishes,
>> Jan-Mathijs
>>
>> On Jul 16, 2013, at 2:11 PM, ingenieur eniso wrote:
>>
>> Dear all,
>> I am working on spatiotemporal mapping of 2D and 3D EEG data.
>>  I want to develop the method of surface interpolation, what is the
>> function in FieldTrip that develops this interpolation method.
>>
>> I hope you will send me positive and helpful response.
>>
>> Thanks a lot in advance!
>>
>> Best,
>>
>> ahmed
>>
>> _______________________________________________
>> fieldtrip mailing list
>> fieldtrip at donders.ru.nl
>> http://mailman.science.ru.nl/mailman/listinfo/fieldtrip
>>
>>
>>     Jan-Mathijs Schoffelen, MD PhD
>>
>> Donders Institute for Brain, Cognition and Behaviour,
>> Centre for Cognitive Neuroimaging,
>> Radboud University Nijmegen, The Netherlands
>>
>> Max Planck Institute for Psycholinguistics,
>> Nijmegen, The Netherlands
>>
>> J.Schoffelen at donders.ru.nl
>> Telephone: +31-24-3614793
>>
>> http://www.hettaligebrein.nl
>>
>>
>> _______________________________________________
>> fieldtrip mailing list
>> fieldtrip at donders.ru.nl
>> http://mailman.science.ru.nl/mailman/listinfo/fieldtrip
>>
>
>
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