[FieldTrip] Setting up MNE
Vitória Magalhães Piai
vitoria.piai at gmail.com
Wed Nov 16 12:21:53 CET 2011
Hi,
I'm following the tutorial on MNE on the Wiki. I'm now at
export MNE_ROOT=<MNE directory>
cd $MNE_ROOT/bin
. ./mne_setup_sh
export SUBJECTS_DIR=<Subject directory>
export SUBJECT=Subject01
When creating the source space, I get the error "/Could not find the MRI
data//directory ..."
/I now have to the same directory as I had it for Freesurfer a few steps
later: export SUBJECTS_DIR=<Subject directory>
On another Wiki page, I found the following:
MNE requires to set up the same environmental variables as FS. It is
because MNE will look for the MRI data that is processed by FS
(therefore, it will look for directories that are made by FS).
Therefore, *SUBJECTS_DIR* environmental variable should refer to that
directory where the anatomical data is (pre-processed by FS), and
*SUBJECT* should refer to the sub-directory of SUBJECTS_DIR where the
anatomical data is from the person whose data is analyzed.
<MNE ANALYSIS DIR>/subjects/<subject's name>: contains the output from FS
I thought I had it right but I'm a bit confused now. What does MNE need
exactly? I can't really figure out where it goes wrong from the MNE
tutorial either.
Thanx a lot, Vitória
--
** Please consider the environment - do you really need to print? **
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