SPM2 related error message when doing volumesegment

Y Chen ychen at BME.UFL.EDU
Tue Apr 17 18:14:40 CEST 2007


Sammeer,

Thanks for the kind help. After I defined the full path to T1.mnc file, it 
still crashed. Here is what I am doing:

mri = read_fcdc_mri('Subject01.mri');
cfg                 = [];
cfg.template        = 'D:\mat\toolbox\spm2\templates\T1.mnc';
cfg.name            = 'segment';
cfg.write           = 'yes';
cfg.coordinates     = 'ctf';
[segmentedmri]      = volumesegment(cfg, mri);


The error message is:

??? Error using ==> spm_vol>subfunc1
Can't get volume information 
for '/home/common/matlab/spm2/templates/T1.mnc'

Error in ==> spm_vol>subfunc2 at 51
	V = subfunc1(P);

Error in ==> spm_vol at 37
V = subfunc2(P);

Error in ==> spm_segment>get_affine_mapping at 226
if ~isempty(VG) & ischar(VG), VG = spm_vol(VG); end;

Error in ==> spm_segment>init_sp at 567
MM          = get_affine_mapping(VF,PG,flags.affreg);

Error in ==> spm_segment at 91
SP         = init_sp(flags.estimate,VF,PG);

Error in ==> volumesegment at 235
  spm_segment(Va,cfg.template,flags);

Error in ==> vol_singleshell at 8
[segmentedmri]      = volumesegment(cfg, mri);

What wrong I did? Further help is very much appreciated.

Chen



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