ploting, artifacts, planar saving options, Hilbert, last mail
Teresa Montez
t.montez at VUMC.NL
Tue Feb 1 17:05:45 CET 2005
Dear experts,
I have some questions:
1) MULTIPLOT
Is it possible to use multiplotER for only one dataset of on-going activity?
I tried with cfg.yparam = ´datatest´
%%%%%%%%%%%%
CODE
%%%%%%%%%%%%
cfgpre = [];
cfgpre.dataset = 'C:\Data\A002-EC_20021016_02.ds'
cfgpre.trl= [1 150000 0]
cfgpre.channel={'MEG' 'HEOG' 'VEOG' 'ECG'}
datatest = preprocessing(cfgpre)
cfgpre.yparam = 'datatest'
% field to be plotted on y-axis (default = 'avg')
multiplotER(cfgpre,datatest)
%%%%%%%%%%%
ERROR
%%%%%%%%%%%
??? Reference to non-existent field 'avg'.
Error in ==> C:\Matlab\FieldTrip\fieldtrip-0.9.4\multiplotER.m
On line 86 ==> P(:,:,k) = eval(['dTmp.',cfg.yparam]);
%%%%%%
Then I tried:
%%%%%%%
CODE
%%%%%%%
cfgpre.trl= [[1:2]', [150*ones(1,2)]', [zeros(1,2)]']
avg = timelockanalysis(cfgpre,datatest)
cfgpre.yparam = 'avg'
%%%%%
ERROR
%%%%%
averaging trial 1 of 1
??? Out of memory. Type HELP MEMORY for your options.
Error in ==> C:\Matlab\FieldTrip\fieldtrip-0.9.4\timelockanalysis.m
On line 402 ==> dat = data.trial{i}(chansel,begsampl:endsampl);
%%%%%%
Do not know if it is just a memory problem - should not be since I choose small trials (the same to get it as average) - or if it still would not work with more memory.
Also tried with only 'MEG' channels, but same problem.
__________________________________________
2) ARTIFACT REJECTION
I read the mail about artifact_eog.m, I am interested in the code that was not downloaded if that is possible.
And how to use the GUI artifact_viewer.m?
%%%%%
CODE
%%%%%
cfgpre.rejecteog = 'yes';
cfgpre.artfctdef.eog.sgn = 'VEOG';
cfgpre.artfctdef.eog.pssbnd = [5 15];
cfgpre.artfctdef.eog.fltord = 4;
cfgpre.artfctdef.eog.padding= 0.2;
cfgpre.artfctdef.eog.pretim = 0.1;
cfgpre.artfctdef.eog.psttim = 0.1;
artifact_viewer (cfgpre, cfgpre.artfctdef, cfgpre.rejecteog, datatest, artfctchn,flag)
%%%%%%
ERROR
%%%%%%
??? Undefined function or variable 'artfctchn'.
%%%%%
Also "z_tdata" = data set and what is "flag"?
__________________________________________
3) PLANAR PLOT
Is it possible to save a data set after aplying the megplanar.m in the CTF ".ds" format to open it with the DataEditor?
__________________________________________
4) HILBERT TRANSFORM
Is it possible to compute the Hilbert transform in order to make a phase synchronization analysis of the data?
__________________________________________
5) /home/common
Is there an external path?
__________________________________________
If you are still with me after all these questions, thanks in advance for your patience.
Best regards,
Teresa
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