[FieldTrip] Issue running "ft_freqstatistics" on macOS with Apple silicon

[Camilo Castelblanco Riveros]

It worked!
Thank you for your help and patience with this simple issue, Dr. Schoffelen.

With gratitude,
Camilo
*================================*
*Camilo Castelblanco Riveros (He/His)*
Ph.D. Candidate (G3)
Robertson Lab <https://www.robertsonlab.com/> & Bujarski Lab
<https://www.dartmouth-hitchcock.org/research/search-clinical-trials/trial/STUDY02001606>
Student Interest Group in Neurology (SIGN
<https://geiselmed.dartmouth.edu/student-gov/student-groups/>) Co-Leader
Diversity Student Advisory Board Member
e: ccastelblanco.gr at dartmouth.edu
<camilo.a.castelblanco.riveros.gr at dartmouth.edu>
Zoom <https://dartmouth.zoom.us/my/ccastelblanco>

[image: Integrative Neuroscience at Dartmouth (IND) (@DartmouthNeuro) /
Twitter]


On Mon, Oct 7, 2024 at 11:49 AM Schoffelen, J.M. (Jan Mathijs) via
fieldtrip <fieldtrip at science.ru.nl> wrote:

> Hi Camilo,
>
> Have you recently updated your fieldtrip version? I think that the
> mexmaca64 compiled code was added a while back (w.r.t. the spm_bwlabel
> function it seems that this has been added about 8 months ago, as far as I
> can see in the repo’s history on github).
>
> Best wishes,
> Jan-Mathijs
>
>
>
> On 7 Oct 2024, at 17:11, Camilo Castelblanco Riveros via fieldtrip <
> fieldtrip at science.ru.nl> wrote:
>
> Hi!
>
> Thanks in advance for your support.
>
> *Context*:
> I am trying to run "ft_freqstatistics" comparing conditions within an
> individual subject.
> *Issue*:
> When running the code, I get the following error:
> ---
> generated 1000 random permutations
> computing a parametric threshold for clustering
> computing statistic
> estimated time per randomization is 0.13 seconds
> computing statistic 1000 from 1000
>
> Error using spm_bwlabel (line 27)
> spm_bwlabel.c not compiled - see Makefile
> ---
>
> *Troubleshooting*:
> 1. I inspected my fieldtrip SPM toolbox
> (''...GitHub/fieldtrip/external/spm12'') has the spm_bwlabel files but not
> the spm_bwlabel.mexmaca64. I think I need the spm_bwlabel.mexmaca64 to run
> it on my machine; is that correct?
> 2. Doing some reading, I may need to compile the spm_make_standalone.m
> file. However, I do not know how to do it in Fieldtrip's path.
>
> *My code*:
> cfg = [];
> cfg.parameter = 'powspctrm'; % Specify power spectrum parameter
> cfg.method = 'montecarlo'; % Use permutation testing
> cfg.statistic = 'depsamplesT'; % Dependent samples t-test
> cfg.correctm = 'cluster'; % Use cluster-based correction
> cfg.clusteralpha = 0.05; % Threshold for forming clusters
> cfg.clusterstatistic = 'maxsum'; % Sum of t-values for defining clusters
> cfg.alpha = 0.025; % Significance level for two-tailed test
> cfg.tail = 0; % Two-tailed test
> cfg.clustertail = 0; % Two-tailed cluster statistics
> cfg.numrandomization = 1000; % Number of random permutationcfg.neighbours
> = []; % No neighborhood structure needed for iEEG
> % Design matrix
> design = zeros(2, ntrials_low + ntrials_high);
> design(1, 1:ntrials_low) = 1; % Assign label 1 to trials in the low
> condition
> design(1, ntrials_low+1:end) = 2; % Assign label 2 to trials in the high
> condition
> design(2, :) = [1:ntrials_low, 1:ntrials_high]; % Assign trial indices
> cfg.design = design;
> cfg.uvar = 2; % unit of observation (subject)
> cfg.ivar = 1; % independent variable (condition)
> %7 Compute statistics[stat] = ft_freqstatistics(cfg, TFR_low, TFR_high);
>
> With gratitude,
> Camilo
> *================================*
> *Camilo Castelblanco Riveros (He/His)*
> Ph.D. Candidate (G3)
> Robertson Lab <https://www.robertsonlab.com/> & Bujarski Lab
> <https://www.dartmouth-hitchcock.org/research/search-clinical-trials/trial/STUDY02001606>
> Student Interest Group in Neurology (SIGN
> <https://geiselmed.dartmouth.edu/student-gov/student-groups/>) Co-Leader
> Diversity Student Advisory Board Member
> e: ccastelblanco.gr at dartmouth.edu
> <camilo.a.castelblanco.riveros.gr at dartmouth.edu>
> Zoom <https://dartmouth.zoom.us/my/ccastelblanco>
>
> [image: Integrative Neuroscience at Dartmouth (IND) (@DartmouthNeuro) /
> Twitter]
> _______________________________________________
> fieldtrip mailing list
> https://mailman.science.ru.nl/mailman/listinfo/fieldtrip
> https://doi.org/10.1371/journal.pcbi.1002202
>
>
> _______________________________________________
> fieldtrip mailing list
> https://mailman.science.ru.nl/mailman/listinfo/fieldtrip
> https://doi.org/10.1371/journal.pcbi.1002202
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20241008/511ce8e8/attachment.htm>