[FieldTrip] plotting open brain on source level

[philip Joadavi]

Dear Xavier,

Many thanks for your email. I managed to do that in one figure. I plotted
them separately and then glued them together using 'imtile' Matlab
function, and it works :) .

Best,
Philip

On Thu, Aug 11, 2022 at 11:13 PM Xavier Vrijdag via fieldtrip <
fieldtrip at science.ru.nl> wrote:

> Hi Philip,
>
>
>
> I created the following script to create the four images on the outside of
> your figure.
>
>
>
>     % plot the t values on the brain surface in 4 planes
>
>     PlotNames={'left lateral' 'left sagittal' 'right lateral' 'right
> sagittal'};
>
>     for p=1:4
>
>         cfg = [];
>
>         cfg.method        = 'surface';
>
>         cfg.projmethod = 'project';
>
>         cfg.projvec = [0 5];
>
>         if ismember(p,[1 2])
>
>             cfg.surffile = [FIELDTRIPDIR
> '/template/anatomy/surface_white_left.mat'];
>
>         else
>
>             cfg.surffile = [FIELDTRIPDIR
> '/template/anatomy/surface_white_right.mat'];
>
>         end
>
>         cfg.funparameter  = 'stat';
>
>         cfg.maskparameter = 'mask';
>
>         cfg.opacitylim = [0 1];
>
>         cfg.funcolorlim   = 'maxabs';
>
>         cfg.camlight ='off';
>
>         cfg.figurename    = [PlotNames{p}];
>
>         ft_sourceplot(cfg, stat{a});
>
>
>
>         %mirror image over x-axis
>
>         if ismember(p,[1 3])
>
>             set(gca, 'xdir', 'reverse')
>
>         end
>
>
>
>         % rotate image to show the wanted image
>
>         if ismember(p,[3,4])
>
>             view ([270,0])
>
>         else
>
>             view ([90 0])
>
>         end
>
>
>
>         camlight %apply lighting on the image side on view
>
>         print(['sourceresults/' cfg.figurename '.pdf'], '-dpdf',
> '-fillpage');
>
>     end
>
>
>
> I am not sure if this will help solving your problem. I haven’t figured
> out a way to get them into 1 figure.
>
>
>
> Regards,
>
>
> Xavier
>
>
>
> *From: *fieldtrip <fieldtrip-bounces at science.ru.nl> on behalf of philip
> Joadavi via fieldtrip <fieldtrip at science.ru.nl>
> *Reply to: *FieldTrip discussion list <fieldtrip at science.ru.nl>
> *Date: *Thursday, 11 August 2022 at 9:56 PM
> *To: *FieldTrip discussion list <fieldtrip at science.ru.nl>
> *Cc: *philip Joadavi <p.joadavi at gmail.com>
> *Subject: *[FieldTrip] plotting open brain on source level
>
>
>
> Dear all,
>
>
>
> I want to plot my beamforming results similar to the figure below, with
> both the medial and lateral sides of each hemisphere.
>
>
>
> I would appreciate it if you could let me know if I can plot it using
> FieldTrip.
>
>
>
>
>
>
>
> Best,
>
> Philip
> _______________________________________________
> fieldtrip mailing list
> https://mailman.science.ru.nl/mailman/listinfo/fieldtrip
> https://doi.org/10.1371/journal.pcbi.1002202
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20220814/1d08cddf/attachment.htm>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image001.png
Type: image/png
Size: 87555 bytes
Desc: not available
URL: <http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20220814/1d08cddf/attachment.png>