[FieldTrip] ft_prepare_mesh error

Camille Fakche camille.fakche at gmail.com
Mon Sep 17 14:20:46 CEST 2018


Hi,

I run a Matlab script that called functions from Freesurfer and Fieldtrip
softwares to process human ECoG (i.e. Fieldtrip tutorial on human ECoG),
and I systematically get the following error message when I called the
function ft_prepare_mesh to create a cortex hull :

adding the FreeSurfer environment
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
  Referenced from:
/Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___emutls_get_address
  Referenced from:
/Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
  Expected in: /usr/lib/libSystem.B.dylib

mris_fill -c -r 1 /Users/camille/Desktop/Work/IRM/mn/surf/lh.pial
/private/tmp/tp89b7981c_34ea_4609_988c_c4b150e3d4b7_pial.filled.mgz: Aborted
reading filled volume...
gunzip: can't stat:
/private/tmp/tp89b7981c_34ea_4609_988c_c4b150e3d4b7_pial.filled.mgz
(/private/tmp/tp89b7981c_34ea_4609_988c_c4b150e3d4b7_pial.filled.mgz.gz):
No such file or directory
ERROR: problem reading fname.

I believe that it is a problem from Freesurfer paths, but I don't know how
to solve it. Does someone have an idea?

Thank you.
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