[FieldTrip] MRI low contrast

Michał Komorowski michak at is.umk.pl
Mon Sep 11 23:16:54 CEST 2017


Dear Fieldtrippers,

How to correct low contrast in MR image when using ft_mri_read and
ft_sourceplot to read and display MR image? (see attachment
mri00_lowctrst.png)

For comparison, same .nii opened with mricron software (
http://people.cas.sc.edu/rorden/mricron/install.html) displays with proper
contrast (see attachment mri00_hictrst.png)

Code:

ss = 'sub1';
f = ['../data/ind/', ss, '/mri/mri00.nii'];
mri00 = ft_read_mri(f)
ft_sourceplot([],mri00)


Thank you in advance !

Michał Komorowski, MSc
Nicolaus Copernicus University in Toruń
Faculty of Physics, Astronomy and Informatics
Department of Informatics
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