[FieldTrip] possible bug when using old neuromas data with newer fieldtrip version
russ port
russgport at gmail.com
Tue Jun 20 03:54:07 CEST 2017
Hi All,
Sorry to bother you all, but I was wondering if I may have found a possible bug. If so, I’ll submit a request to the bugzilla subsection. I am not completely sure the issue is not my own incompetence though. The error occurs when using a neuromag dataset that was read in with an old fieldtrip version (i.e. from 2015), and having it undergo ft_artifact_zvalue from a newer version of fieldtrip.
In short, I use the following code:
load('MEGGRAD_Visual_clean_combinedscripts')
datanoline=[]
datanoline=data_clean
load('/MEGGRADfinal_cleaned_jumpartifact_outputcfg_redone_Visual.mat')
cfgaj = [];
% channel selection, cutoff and padding
cfgaj.artfctdef.zvalue.channel = allchanell;
cfgaj.artfctdef.zvalue.cutoff = cfgajout.artfctdef.zvalue.cutoff
cfgaj.artfctdef.zvalue.trlpadding = 0;
cfgaj.artfctdef.zvalue.artpadding = 0;
cfgaj.artfctdef.zvalue.fltpadding = 0.0;
% algorithmic parameters
cfgaj.artfctdef.zvalue.cumulative = 'yes';
cfgaj.artfctdef.zvalue.medianfilter = 'yes';
cfgaj.artfctdef.zvalue.medianfiltord = 9;
cfgaj.artfctdef.zvalue.absdiff = 'yes';
% cfgaj.artfctdef.zvalue.interactive = 'yes';
[cfgajout, artifact_jump] = ft_artifact_zvalue(cfgaj,datanoline);
When I run this code in a 2015 version of fieldtrip, it works fine (without any error). On the other hand, in the 2016 version of fieldtrip I have (as well as in the latest version which I downloaded this weekend), I get the following error:
Error using ft_datatype_sens (line 278)
unexpected number of coils (408)
contributing to channel MEG0113 (1)
Error in ft_datatype_raw (line 141)
data.grad =
ft_datatype_sens(data.grad);
Error in ft_checkdata (line 236)
data = ft_datatype_raw(data,
'hassampleinfo', hassampleinfo);
Error in ft_artifact_zvalue (line 215)
data = ft_checkdata(data, 'datatype',
'raw', 'hassampleinfo', 'yes’);
The dataset datanoline (as well as cfgaj) are linked to below (sorry it’s dropbox, but I’m not quite sure how to do it otherwise).
https://www.dropbox.com/s/86t5agwv2vanrh3/MEGGRAD_Visual_clean_combinedscripts.mat?dl=0 <https://www.dropbox.com/s/86t5agwv2vanrh3/MEGGRAD_Visual_clean_combinedscripts.mat?dl=0>
https://www.dropbox.com/s/rw8e7mof8plss72/MEGGRADfinal_cleaned_jumpartifact_outputcfg_redone_Visual.mat?dl=0 <https://www.dropbox.com/s/rw8e7mof8plss72/MEGGRADfinal_cleaned_jumpartifact_outputcfg_redone_Visual.mat?dl=0>
Sorry for the bother,
Russ
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