[FieldTrip] Coordinate of fiducials

Arjen Stolk a.stolk8 at gmail.com
Wed Feb 1 19:38:15 CET 2017

Hi Elana,

This page describes how to obtain continuous head positions,

>From the top of my head, ft_read_headshape can also get you the fiducial
positions at recording onset (see its help, and/or code in
ft_realtime_headlocalizer), and perhaps also at recording offset.

Best, Arjen

2017-02-01 10:18 GMT-08:00 Harris, Elana <Elana.Harris at cchmc.org>:

> Dear community,
> Does anyone know the format of the CTF  Hz and Hz2 files so that we can
> get x,y,z coordinates for each fiducial before and after the recording spit
> out in MATLAB
> Thanks,
> Elana
> ------------------------------
> *From:* fieldtrip-bounces at science.ru.nl <fieldtrip-bounces at science.ru.nl>
> on behalf of Jennifer Elam <elam4hcp at gmail.com>
> *Sent:* Wednesday, February 1, 2017 1:05:18 PM
> *To:* fieldtrip at science.ru.nl
> *Subject:* [FieldTrip] Announcing HCP Course 2017 at UBC in Vancouver
> June 19-23!
> We are pleased to announce the *2017 HCP Course: "Exploring the Human
> Connectome"*
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__store.humanconnectome.org_courses_2017_exploring-2Dthe-2Dhuman-2Dconnectome.php&d=DwMFaQ&c=P0c35rBvlN7D8BNx7kSJTg&r=0zypa9e5hKKp6Dlr4vDw8BiqKwwEYMFtAcQeKwciN-s&m=f7HTPnVFgQflJvHLJvPtv4l7ltCrqxVe294kQW3Nzig&s=IGkMALN3otLOEWVzdpUjTocbRQNr7IE0iD_cCkmKD_Q&e=>,
> to be held *June 19 – 23, 2017* at the University of British Columbia
> (UBC)
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__ubcconferences.com_&d=DwMFaQ&c=P0c35rBvlN7D8BNx7kSJTg&r=0zypa9e5hKKp6Dlr4vDw8BiqKwwEYMFtAcQeKwciN-s&m=f7HTPnVFgQflJvHLJvPtv4l7ltCrqxVe294kQW3Nzig&s=-kmLOVCkIo8dltPqijaULVPw0H1Wyz01HKX98Omzdj4&e=>,
> in Vancouver, BC, Canada. This is the week before the Organization of
> Human Brain Mapping (OHBM) annual meeting
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.humanbrainmapping.org_i4a_pages_index.cfm-3FpageID-3D3734&d=DwMFaQ&c=P0c35rBvlN7D8BNx7kSJTg&r=0zypa9e5hKKp6Dlr4vDw8BiqKwwEYMFtAcQeKwciN-s&m=f7HTPnVFgQflJvHLJvPtv4l7ltCrqxVe294kQW3Nzig&s=MfelwGWec8xABgX0eDH_jyHQyUvjpRVuFbodlr3z6ng&e=>
>  to be held in downtown Vancouver (about 8 miles away from UBC) June
> 25-29.
> This 5-day intensive course will provide training in acquisition,
> processing, analysis and visualization of whole brain imaging and
> behavioral data using methods and informatics tools developed by the
> WU-Minn-Oxford Human Connectome Project (HCP) consortium.
> The course is designed for investigators who are interested in:
>    - using data collected and distributed from the HCP young adult study
>    - acquiring and analyzing HCP-style imaging and behavioral data at
>    your own institution
>    - processing your own non-HCP data using HCP pipelines and methods
>    - using Connectome Workbench
>    <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.humanconnectome.org_software_connectome-2Dworkbench.html&d=DwMFaQ&c=P0c35rBvlN7D8BNx7kSJTg&r=0zypa9e5hKKp6Dlr4vDw8BiqKwwEYMFtAcQeKwciN-s&m=f7HTPnVFgQflJvHLJvPtv4l7ltCrqxVe294kQW3Nzig&s=BCHIIMMvKPOd3xS27XiixhdSgetNJgCKjzdPW376qB8&e=>
>     tools and sharing data using the BALSA
>    <https://urldefense.proofpoint.com/v2/url?u=https-3A__balsa.wustl.edu_&d=DwMFaQ&c=P0c35rBvlN7D8BNx7kSJTg&r=0zypa9e5hKKp6Dlr4vDw8BiqKwwEYMFtAcQeKwciN-s&m=f7HTPnVFgQflJvHLJvPtv4l7ltCrqxVe294kQW3Nzig&s=8qytFLTyOC0l47SRu0arNiZmCLwisjV7-dQxlVaT3kE&e=>
>     imaging database
>    - learning HCP multimodal neuroimaging analysis methods, including
>    those that combine MEG and MRI data
>    - exploring the HCP MMP 1.0
>    <https://urldefense.proofpoint.com/v2/url?u=http-3A__humanconnectome.org_about_pressroom_nature-2Darticle-2Dcortical-2Dbrain-2Dmaps-2Dat-2Dthe-2Dhighest-2Dresolution-2Dto-2Ddate_&d=DwMFaQ&c=P0c35rBvlN7D8BNx7kSJTg&r=0zypa9e5hKKp6Dlr4vDw8BiqKwwEYMFtAcQeKwciN-s&m=f7HTPnVFgQflJvHLJvPtv4l7ltCrqxVe294kQW3Nzig&s=vv4cDO-r5MliyWsfBan1soQ9uaG4z3nnstwd6IZo0ro&e=>
>     multimodal parcellation brain map and learning about how it can be
>    used in your analyses
>    - positioning yourself to capitalize on HCP-style data being distributed
>    by the Connectome Coordinating Facility (CCF) from forthcoming large-scale
>    projects (e.g., Lifespan HCP development and aging and Connectomes
>    Related to Human Disease projects)
> Participants will learn how to acquire, analyze, visualize, and interpret
> data from four major MR modalities (structural MR, resting-state fMRI,
> diffusion imaging, task-evoked fMRI) plus magnetoencephalography (MEG) and
> extensive behavioral data.  Lectures and labs will provide grounding in
> neurobiological as well as methodological issues involved in interpreting
> multimodal data, and will span the range from single-voxel/vertex to brain
> network analysis approaches.
> The course is open to students, postdocs, faculty, and industry
> participants.  The course is aimed at both new and current users of HCP
> data, methods, and tools, and will cover both basic and advanced topics.
> Prior experience in human neuroimaging or in computational analysis of
> brain networks is desirable, preferably including some familiarity with
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__fsl.fmrib.ox.ac.uk_fsl_fslwiki&d=DwMFaQ&c=P0c35rBvlN7D8BNx7kSJTg&r=0zypa9e5hKKp6Dlr4vDw8BiqKwwEYMFtAcQeKwciN-s&m=f7HTPnVFgQflJvHLJvPtv4l7ltCrqxVe294kQW3Nzig&s=FkIJchrO7kxdIGf__-gAWr1fCcydPkfPGfK2xaKss6I&e=>
>  and Freesurfer
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__surfer.nmr.mgh.harvard.edu_&d=DwMFaQ&c=P0c35rBvlN7D8BNx7kSJTg&r=0zypa9e5hKKp6Dlr4vDw8BiqKwwEYMFtAcQeKwciN-s&m=f7HTPnVFgQflJvHLJvPtv4l7ltCrqxVe294kQW3Nzig&s=YytSx1Fi1kHubaVRYrSvyxQ15X1f-n3J4KQHFNpARh4&e=>
>  software.
> For more info and to register visit the HCP Course 2017 website
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__store.humanconnectome.org_courses_2017_exploring-2Dthe-2Dhuman-2Dconnectome.php&d=DwMFaQ&c=P0c35rBvlN7D8BNx7kSJTg&r=0zypa9e5hKKp6Dlr4vDw8BiqKwwEYMFtAcQeKwciN-s&m=f7HTPnVFgQflJvHLJvPtv4l7ltCrqxVe294kQW3Nzig&s=IGkMALN3otLOEWVzdpUjTocbRQNr7IE0iD_cCkmKD_Q&e=>.
> If you have any questions, please contact us at:
> hcpcourse at humanconnectome.org
> We look forward to seeing you in Vancouver!
> Best,
> 2017 HCP Course Organizers
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