[FieldTrip] Netstation >> Fieldtrip conversion

Sat Dec 9 13:12:48 CET 2017

Hi Anna

Fieltrip could read the MFF file directly using ft_preprocessing(), use the
folder like it was a file. In NS5 there is an issue with the triggers'
files and the spaces should be replaces with underscores (fix it if you get
an error).

I move to field-trip in a very early stage, but you can export to fieldtrip
in any stage you like.

Good luck

Omer Sharon
PhD student at NirLab
Department of physiology and pharmacology
Sackler Faculty of Medicine
Tel Aviv University, Israel

On Fri, Dec 8, 2017 at 1:00 PM, <fieldtrip-request at science.ru.nl> wrote:

> Send fieldtrip mailing list submissions to
>         fieldtrip at science.ru.nl
>
> To subscribe or unsubscribe via the World Wide Web, visit
>         https://mailman.science.ru.nl/mailman/listinfo/fieldtrip
> or, via email, send a message with subject or body 'help' to
>         fieldtrip-request at science.ru.nl
>
> You can reach the person managing the list at
>         fieldtrip-owner at science.ru.nl
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of fieldtrip digest..."
>
>
> Today's Topics:
>
>    1. Fwd: Netstation >> Fieldtrip conversion (Anna Kolesnik)
>    2. Dependant samples F multivariate (Dar?as Manuel Holgado Nu?ez)
>    3. Postdoc Position @Blechert-lab (Nathan Weisz)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Thu, 7 Dec 2017 15:02:44 +0000
> From: Anna Kolesnik <akoles01 at mail.bbk.ac.uk>
> To: fieldtrip at science.ru.nl
> Subject: [FieldTrip] Fwd: Netstation >> Fieldtrip conversion
> Message-ID: <3EDA86DB-659F-4ACA-AEA7-7F601A56AECD at mail.bbk.ac.uk>
> Content-Type: text/plain; charset=us-ascii
>
> Dear members of the discussion list,
>
> I am looking for advice on how best to export pre-processed data from
> Netstation (version 5+) to Fieldtrip. We have data that is already
> filtered, segmented, and cleaned for artefacts that needs to be imported
> into Fieldtrip to run the time-frequency analysis.
> I know that it is possible to export the processed file to EEGLAB
> (although I know of some bugs), but has anyone successfully attempted to
> export to Fieldtrip? If so, what processing stage was it at and what was
> the format most suitable for this operation?
>
>
> Thank you in advance!
>
>
> Anna Kolesnik
> PhD student at the Centre for Brain and Cognitive Development
> Birkbeck College, University of London
> The BMA House, Tavistock Square
> WC1H 9JP
>
>
> ------------------------------
>
> Message: 2
> Date: Thu, 7 Dec 2017 20:24:30 +0100
> From: Dar?as Manuel Holgado Nu?ez <dariashn at ugr.es>
> To: fieldtrip at science.ru.nl
> Subject: [FieldTrip] Dependant samples F multivariate
> Message-ID: <9F7CADE9-5655-4686-B5E2-672D2CF82B08 at ugr.es>
> Content-Type: text/plain; charset="utf-8"
>
> Dear list
>
> My name is Darias Holgado and I am working in the Mind, Brain and
> Behaviour Research Centre in Granada on tDCS, EEG and Sport performance. I
> am analysing data of a project, where we recorded EEG under three tDCS?
> stimulation.
>
> I have carried out a tDCS?s study in a within-subjects fashion. I have 3
> conditions (anodal, cathodal and sham) x one measure (3x1). I am performing
> permutation test with the montecarlo approach and the ft_statfun_
> dsamplesFmultivariate.
> After having specified the design and running the script, it seems that it
> is ok, but in the output the total number of variables appears as 2, when
> it is supposed it should say 3. is it that correct? The design I specified
> it seems correct and it is working but this data is confusing.
>
> The cfg and design I use are as follows:
>
> %Within-Subject design 3 condition x 1 measure
> cfg.design(1,1:3*Nsub)  = [ones(1,Nsub) 2*ones(1,Nsub) 3*ones(1,Nsub)];
> cfg.design(2,1:3*Nsub)  = [1:Nsub 1:Nsub 1:Nsub];
> cfg.ivar                = 1;
> cfg.uvar                = 2;
>
> cfg.channel = chanlocs;
> cfg.method = 'montecarlo';
> cfg.statistic   = 'ft_statfun_depsamplesFmultivariate';
> cfg.correctm = 'cluster';
> cfg.clusterstatistic = 'maxsum';
> cfg.minnbchan = 2;
> cfg.numrandomization = 5000;
> cfg.tail = 1;
> % cfg.clustertail = 1;
> cfg.alpha = 0.025;
> %cfg.frequency = freqrange;
> %cfg.avgoverfreq = 'yes';
> cfg.neighbours = neighbours;
>
>
> Thank you for your time
>
>
> Best regards,
> ------------------------------------------------------------
> ---------------------
> Dar?as Holgado Nu?ez
> Mind, Brain and Behaviour Research Centre.
> University of Granada (Spain)
> https://www.researchgate.net/profile/Darias_Holgado
>
> -------------- next part --------------
> An HTML attachment was scrubbed...
> URL: <http://mailman.science.ru.nl/pipermail/fieldtrip/
> attachments/20171207/96780d19/attachment-0001.html>
>
> ------------------------------
>
> Message: 3
> Date: Fri, 08 Dec 2017 07:46:48 +0100
> From: Nathan Weisz <nathanweisz at me.com>
> To: FieldTrip discussion list <fieldtrip at science.ru.nl>
> Subject: [FieldTrip] Postdoc Position @Blechert-lab
> Message-ID: <E0247A47-D301-4C06-A295-6843BCEE068B at me.com>
> Content-Type: text/plain; charset="us-ascii"
>
> FYI.
>
>  Post-doc and PhD position focusing on the cognitive neuroscience of
> eating behavior at  the center for cognitive neuroscience, Salzburg
> University,  advertized on
> www.eat.sbg.ac.at <http://www.eat.sbg.ac.at/>
> -------------- next part --------------
> An HTML attachment was scrubbed...
> URL: <http://mailman.science.ru.nl/pipermail/fieldtrip/
> attachments/20171208/0634be20/attachment-0001.html>
>
> ------------------------------
>
> _______________________________________________
> fieldtrip mailing list
> fieldtrip at donders.ru.nl
> https://mailman.science.ru.nl/mailman/listinfo/fieldtrip
>
> End of fieldtrip Digest, Vol 85, Issue 5
> ****************************************
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20171209/be68f044/attachment-0001.html>