[FieldTrip] head model mat contains only NaN values
gj
gina.joue at univr.it
Thu May 19 18:36:38 CEST 2016
Hi FieldTrippers,
While trying to calculate a head model (FT ver.20160309), the head model
contains only NaNs, and I get the following errors:
------------- beg error ------------
Warning: NaN detected, trying once more with slightly different vertex
positions
> In ft_prepare_headmodel (line 280)
Warning: No conductivity is declared, assuming standard values
> In ft_headmodel_bemcp (line 79)
In ft_prepare_headmodel (line 281)
Warning: Matrix is singular, close to singular or badly scaled. Results
may be inaccurate. RCOND = NaN.
> In ft_headmodel_bemcp (line 185)
In ft_prepare_headmodel (line 281)
------------- end error ------------
This was what I ran:
-----------
smri = ft_read_mri(smrifn); % subject's own structural MRI
cfg = [];
mri.coordsys = 'MNI';
cfg.brainthreshold = 0.5;
cfg.output = {'brain','skull','scalp'};
smri_seg = ft_volumesegment(cfg, smri);
cfg=[];
cfg.tissue={'brain','skull','scalp'};
cfg.method = 'projectmesh';
cfg.numvertices = [2400 1600 800];
mesh_hd=ft_prepare_mesh(cfg,smri_seg);
cfg = [];
cfg.method = 'bemcp';
headmodel = ft_prepare_headmodel(cfg, mesh_hd);
-----------
Not sure if this might be related, but we have head+neck MRIs and when I
plot the meshes, I see that the "scalp" has vertices that connect planes
internal to the brain (see images attached). I've tried different
ft_prepare_mesh methods, different number of vertices....
Thanks in advance for any advice!
Gina
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