[FieldTrip] warnings when running ft_sourceinterpolate
Maris Skujevskis
icelandhouse at gmail.com
Sun Jul 17 21:30:37 CEST 2016
Hi all,
I get two warnings when running ft_sourceinterpolate after DICS beamformer
based source reconstruction. The warnings and my question come after the
pasted code section.
The code that generates the input to ft_sourceinterpolate:
%% Source analysis
cfg = [ ];
cfg.method = 'dics';
cfg.frequency = 10;
cfg.grid = leadfield_ft; (leadfield_ft.leadfield
is a cell structure with non-empty cells containing matrices of size
channel count x 3 )
cfg.keepleadfield = 'yes';
cfg.headmodel = vol;
cfg.dics.keepfilter = 'yes';
cfg.dics.lambda = '5%';
cfg.dics.fixedori = 'yes';
cfg.dics.keepmom = 'no';
cfg.dics.realfilter = 'yes';
source_A = ft_sourceanalysis(cfg, trials_A);
>>source_A =
freq: 9.8462
dim: [18 21 18]
inside: [6804x1 logical]
leadfield: {1x6804 cell}
pos: [6804x3 double]
method: 'average'
avg: [1x1 struct]
cfg: [1x1 struct]
%% Source interpolation
cfg = [ ];
cfg.parameter = 'pow';
A_int = ft_sourceinterpolate(cfg, source_A,
template_mri);
WARNING 1
Warning: could not determine dimord of "filter" in the following data
> In getdimord (line 541)
In getdatfield (line 31)
In ft_datatype_volume (line 133)
In ft_checkdata (line 329)
In ft_sourceinterpolate (line 160)
freq: 9.8462
dim: [18 21 18]
inside: [6804x1 logical]
leadfield: {1x6804 cell}
cfg: [1x1 struct]
pow: [6804x1 double]
filter: {6804x1 cell}
transform: [4x4 double]
WARNING 2
Warning: could not reshape freq to the expected dimensions
> In ft_datatype_volume (line 138)
In ft_checkdata (line 329)
In ft_sourceinterpolate (line 160)
I understand that cfg.dics.fixedori = 'yes' reduces the dimensions of the
leadfield matrices from 3 x channel number, to 1 x channel number. Does it
mean I can safely ignore the "could not determine dimord of "filter" in the
following data" ? Or is there something wrong in the data structure that I
need to manually fix?
Warning 2 escapes me. There is a only single frequency, to what dimensions
does it need to be reshaped? Can I safely ignore this one or again, some
fixing is needed?
Thanks a lot!
Maris
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