[FieldTrip] 2x3 ANOVA depsamplesHotTsqr

[Aykut Eken]

Dear Julian,

Thank you for your effort. However, that is what MATLAB can do by using the function “rm” and “ranova”. So, I think the cluster permutation approach should be used while applying a N - way repeated measures ANOVA.

Regards

Aykut Eken, PhD

Düzce University
Faculty of Engineering,
Biomedical Engineering Department
Konuralp Campus, 81620
Düzce / Turkey.
Tel : 0380 542 11 00 / 4546
Fax : 0380 542 10 37
e-mail : aykuteken at duzce.edu.tr
e-mail : ekenaykut at gmail.com

> On 21 Dec 2016, at 18:17, Julian Keil <julian.keil at gmail.com> wrote:
> 
> Dear Lin, Aykut and Alex,
> 
> I wrote a fieldtrip-compatibe wrapper function to the ANOVA-Functions by Trujillo-Ortiz (the originals can be found on the Matlab File Exchange) which can handle n-way repeated ANOVAs.
> These functions can handle timlock, TFR or source-level FT structures.
> The code can be found on by Github: https://github.com/juliankeil/VirtualTools <https://github.com/juliankeil/VirtualTools>
> Please be aware, that these ANOVA-functions in DO NOT use a permutation approach or provide any correction based on clusters. All correction for multiple comparisons has to be done after running the ANOVA.
> 
> Some recent examples in which these functions were used are:
> Keil, J., Pomper, U., Senkowski, D., 2016. Distinct patterns of local oscillatory activity and functional connectivity underlie intersensory attention and temporal prediction. … Cortex 74, 277–288. doi:10.1016/j.cortex.2015.10.023
> Roa Romero, Y., Keil, J., Balz, J., Gallinat, J., Senkowski, D., 2016a. Reduced frontal theta oscillations indicate altered crossmodal prediction error processing in schizophrenia. J Neurophysiol 116, 1396–1407. doi:10.1152/jn.00096.2016
> Roa Romero, Y., Keil, J., Balz, J., Niedeggen, M., Gallinat, J., Senkowski, D., 2016b. Alpha-Band Oscillations Reflect Altered Multisensory Processing of the McGurk Illusion in Schizophrenia. Frontiers in Human Neuroscience 10, 41. doi:10.3389/fnhum.2016.00041
> 
> Maybe these reference suggested by an anonymous reviewer could be helpful in the implementation of a permutation approach:
> Anderson, M., Braak, C., 2002. Permutation tests for multi-factorial analysis of variance. Journal of Statistical Computation and Simulation 73, 85–113.
> Anderson, M.J., 2001. Permutation tests for univariate or multivariate analysis of variance and regression. Can. J. Fish. Aquat. Sci. 58, 626–639. doi:10.1139/cjfas-58-3-626
> 
> Good luck,
> 
> Julian
> 
> Am 21.12.2016 um 14:34 schrieb 蔡林:
> 
>> Me too, fieldtrip probably cannot investigate the interactions using cluster-based permutation test.
>> Who can provide alternative methods to solve this kind of problem?
>> 
>> 
>> lin
>> -----原始邮件-----
>> 发件人:"Aykut Eken" <ekenaykut at gmail.com <mailto:ekenaykut at gmail.com>>
>> 发送时间:2016-12-21 20:41:11 (星期三)
>> 收件人: "FieldTrip discussion list" <fieldtrip at science.ru.nl <mailto:fieldtrip at science.ru.nl>>
>> 抄送: 
>> 主题: Re: [FieldTrip] 2x3 ANOVA depsamplesHotTsqr
>> 
>> I also have the same problem. Does fieldtrip have a statistical analysis function for N- way ANOVA?
>> 
>> Aykut
>> 
>> El 21 dic 2016, a las 15:09, Alex Sel <alex.sel at psy.ox.ac.uk <mailto:alex.sel at psy.ox.ac.uk>> escribió:
>> 
>>> Dear list,
>>>  
>>> I have an 2x3 ANOVA design and I would like to test the interactions using the cluster-based permutation test. I would like to use the statfun depsamplesHotTsqr. However, it seems that it has not been implemented yet.
>>>  
>>> Has anyone used the depsamplesHotTsqr and knows how to implement it?
>>>  
>>> Any insights on this would be much appreciated.
>>>  
>>> Thank you.
>>>  
>>> Best wishes, 
>>> Alex Sel, PhD
>>> Postdoctoral Researcher
>>> Department of Experimental Psychology,
>>> University of Oxford,
>>> 9 South Parks Road,
>>> OX1 3UD
>>> Tel: 01865 277 229
>>> Email: Alex.sel at psy.ox.ac.uk <mailto:Alex.sel at psy.ox.ac.uk>
>>>  
>>> _______________________________________________
>>> fieldtrip mailing list
>>> fieldtrip at donders.ru.nl <mailto:fieldtrip at donders.ru.nl>
>>> https://mailman.science.ru.nl/mailman/listinfo/fieldtrip <https://mailman.science.ru.nl/mailman/listinfo/fieldtrip>_______________________________________________
>> fieldtrip mailing list
>> fieldtrip at donders.ru.nl <mailto:fieldtrip at donders.ru.nl>
>> https://mailman.science.ru.nl/mailman/listinfo/fieldtrip
> 
> _______________________________________________
> fieldtrip mailing list
> fieldtrip at donders.ru.nl <mailto:fieldtrip at donders.ru.nl>
> https://mailman.science.ru.nl/mailman/listinfo/fieldtrip <https://mailman.science.ru.nl/mailman/listinfo/fieldtrip>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20161222/19080c31/attachment-0002.html>