[FieldTrip] change orientation of MRI or source plot

[Wu, Jia]

tzvetan,
Thanks for answering my question. It always feels you are not alone when someone gets back. I tried volumeslice but it put the top two images in the opposite way as of fMRI software. That's why I'm trying to find a way to adjust it.
best,
-jia
________________________________
From: fieldtrip-bounces at science.ru.nl [fieldtrip-bounces at science.ru.nl] on behalf of Tzvetan Popov [tzvetan.popov at uni-konstanz.de]
Sent: Friday, September 25, 2015 1:44 PM
To: FieldTrip discussion list
Subject: Re: [FieldTrip] change orientation of MRI or source plot

Hi Jia,
yes there is a way. Please have a look at this FAQ:
http://www.fieldtriptoolbox.org/faq/my_mri_is_upside_down_is_this_a_problem<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.fieldtriptoolbox.org_faq_my-5Fmri-5Fis-5Fupside-5Fdown-5Fis-5Fthis-5Fa-5Fproblem&d=AwMFAw&c=-dg2m7zWuuDZ0MUcV7Sdqw&r=9ehCplyXHP0-m9ayYv1FOg&m=LsSeANE6z-FR6WnQgqKv5Xyp1s1Rs_XBwv8rvweeaf0&s=59qfkkMmKW-JtOLNYr53OzdtSfPF6VMuCZa3Vxgi2pM&e=>

and also this one: http://www.fieldtriptoolbox.org/faq/how_change_mri_orientation_size_fov<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.fieldtriptoolbox.org_faq_how-5Fchange-5Fmri-5Forientation-5Fsize-5Ffov&d=AwMFAw&c=-dg2m7zWuuDZ0MUcV7Sdqw&r=9ehCplyXHP0-m9ayYv1FOg&m=LsSeANE6z-FR6WnQgqKv5Xyp1s1Rs_XBwv8rvweeaf0&s=2oZafKPueFUgK8VwhnBRzTFLtAwyvv6z6q4PCeiNhgU&e=>
Good luck,
tzvetan


Hi,

I have a question about the orientation of MRI and source plot. I made the some comparison plot as below.
http://imgur.com/a/FoMAH<https://urldefense.proofpoint.com/v2/url?u=http-3A__imgur.com_a_FoMAH&d=AwMFAw&c=-dg2m7zWuuDZ0MUcV7Sdqw&r=9ehCplyXHP0-m9ayYv1FOg&m=LsSeANE6z-FR6WnQgqKv5Xyp1s1Rs_XBwv8rvweeaf0&s=jQMLgXsH5b8Bz-GTuRNuIPkPJnnQHqRxdmPk49q6iS0&e=>

The top image is a plot of the T1template, which follows the convention that the top left is coronal, top right is sagittal and the bottom left is axial.

The bottom image is from Subject01.mri downloaded from the fieldtrip server and applied volumeslice. (Without using volumeslice the orientation is not correct either). The coronal and sagittal views were switched.

I'm wondering whether there is a way that I can change the orientation of the plot.

best,
-jia
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