[FieldTrip] ft_volumerealign with headshape
Schoffelen, J.M. (Jan Mathijs)
jan.schoffelen at donders.ru.nl
Tue Nov 17 16:26:27 CET 2015
Hi Tobias,
I came across the same thing, and fixed it locally with a dirty hack. Please do drop by so that we can make a clean fix.
Best,
JM
On Nov 17, 2015, at 4:12 PM, Tobias Staudigl <tobias.stdgl at gmail.com<mailto:tobias.stdgl at gmail.com>> wrote:
Dear all,
I have some trouble using the polhemus headshape to realign the structural mri of a participant. Following an earlier post on this issue (http://mailman.science.ru.nl/pipermail/fieldtrip/2013-April/006493.html), I use ft_volumerealign twice:
cfg = [];
cfg.method = 'interactive';
cfg.coordsys = 'ctf';
mri_realigned = ft_volumerealign(cfg,mri);
works fine, then:
cfg = [];
cfg.method = 'headshape'
cfg.coordsys = 'ctf';
cfg.headshape.headshape = hs;
mri_realigned2 = ft_volumerealign(cfg,mri_realigned);
after the message 'doing interactive realignment with headshape' I get the following error:
**************
Reference to non-existent field 'label'.
Error in ft_datatype_sens (line 136)
nchan = length(sens.label);
Error in ft_checkconfig (line 248)
cfg.elec = ft_datatype_sens(cfg.elec);
Error in ft_interactiverealign (line 68)
cfg.template = ft_checkconfig(cfg.template, 'renamed', {'vol', 'headmodel'});
Error in ft_volumerealign (line 586)
tmpcfg = ft_interactiverealign(tmpcfg);
**************
Reading the polhemus headshape was done with:
[hs]=ft_read_headshape('hs_S01.pos');
which looks fine when plotting it with
ft_plot_headshape(hs);
I am using the fieldtrip version at the Donders.
When using an older version, fieldtrip-20131231, no error occurs.
Any help very much appreciated!
Best,
Tobias
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