[FieldTrip] re template for children

Berdakh Abibullaev berdakho at gmail.com
Thu May 7 15:56:04 CEST 2015


Hi,

I am also using the Dr. Richard's infant database. It took us sometime to
figure out to how prepare forward models in FT.
If you need I have scripts ready to use to get you started smoothly.

​Just let me know. ​

​​
Thanks,

Berdakh Abibullaev,

Postdoctoral Research Scholar ,
Laboratory for Non-invasive Brain-Machine Interfaces,
Department of Electrical Eng. & Computer Science,
University of Houston, E413, Engineering Building II,
Houston, Texas, 77204-4005.
https://www.facebook.com/UHBMIST

On Thu, May 7, 2015 at 3:21 AM, Hélène Guiraud <guiraudh at gmail.com> wrote:

> Hi Till and John,
>
> Thank you, this is perfect!
>
> Best regards,
> Hélène
>
> 2015-04-30 14:12 GMT+02:00 RICHARDS, JOHN <RICHARDS at mailbox.sc.edu>:
>
>> We have a template for children‹actually have for infants from 2 weeks
>> through adults at 89 years.  We also have average electrode positions for
>> EGI sensor nets (GSN128, HGSN128) and the 10-10 system; and segmented
>> priors, stereotaxic atlases, and segmented heads (BEM, FEM).  I also have
>> been using this recently with FT for infants and child/adolescent/adult
>> ages.
>>
>> WWW site: http://jerlab.psych.sc.edu/NeurodevelopmentalMRIDatabase/
>> Fro www site: This is a database of average MRIs and associated MRI
>> volumes for developmental MRI work. It consists of average MRI templates,
>> segmented partial volume estimate volumes for GM, WM, T2W-derived CSF
>> (Description
>> <
>> http://jerlab.psych.sc.edu/NeurodevelopmentalMRIDatabase/Description.html
>> >
>> ). The database is separated into head-based and brain-based averages. The
>> data are separated by ages in months, years, 6-month, or 5-year intervals
>> (Ages and Templates
>> <
>> http://jerlab.psych.sc.edu/NeurodevelopmentalMRIDatabase/agestemplates.htm
>> l>). The templates are grouped into first year (2 weeks through 12
>> months), early childhood (15 months through 4 years), childhood (4 years
>> through 10 years), adolescence (10.5 years through 17.5 years) and adults
>> (18 years through 89 years).
>> Tools for cortical source analysis of EEG and ERP are provided.  These
>> tools are based on the average MRI templates, segmenting, and atlases.
>>
>> Also see my www site, jerlab.psych.sc.edu for publications describing
>> this.  We have a recent chapter that has a good description of the issues
>> behind the database (with Wanze Xie). We have a paper accepted at
>> Neuroimage for their upcoming ³Data Sharing² issue (with Carmen Sanchez,
>> Michelle Phillips-Meek, and Wanze Xie).
>>
>> John
>>
>>
>> ***********************************************
>> John E. Richards Carolina Distinguished Professor
>> Department of Psychology
>> University of South Carolina
>> Columbia, SC  29208
>> Dept Phone: 803 777 2079
>> Fax: 803 777 9558
>> Email: richards-john at sc.edu
>> HTTP: jerlab.psych.sc.edu
>> ***********************************************
>>
>>
>>
>>
>>
>>
>>
>>
>> On 4/30/15, 6:00 AM, "fieldtrip-request at science.ru.nl"
>> <fieldtrip-request at science.ru.nl> wrote:
>>
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>> >
>> >Today's Topics:
>> >
>> >   1. Search for a template children. (H?l?ne Guiraud)
>> >   2. Re: Search for a template children. (Till Schneider)
>> >   3. ICBM 152 templates in FT (Keyvan Mahjoory)
>> >
>> >
>> >----------------------------------------------------------------------
>> >
>> >Message: 1
>> >Date: Wed, 29 Apr 2015 14:45:56 +0200
>> >From: H?l?ne Guiraud <guiraudh at gmail.com>
>> >To: fieldtrip at science.ru.nl
>> >Subject: [FieldTrip] Search for a template children.
>> >Message-ID:
>> >       <
>> CAJ16KS_S7ednTeE2MgaLasRaWD4GK+0ChX0S+nYZzU_-ypdh4w at mail.gmail.com>
>> >Content-Type: text/plain; charset="utf-8"
>> >
>> >Dear community,
>> >
>> >My name is H?l?ne Guiraud and i'm working in DDL lab in Lyon (France) on
>> >speech perception in children using MEG.
>> >The children involved in the study don't pass MRI. We want to achieve
>> >source reconstruction from a template. However I can't find a template
>> >corresponding to the anatomy of a child (8-12 years).
>> >Can someone tell me if there are template children and where I can find
>> >them?
>> >
>> >Best,
>> >
>> >H?l?ne Guiraud
>> >-------------- next part --------------
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>> >
>> >------------------------------
>> >
>> >Message: 2
>> >Date: Wed, 29 Apr 2015 15:53:13 +0200
>> >From: Till Schneider <t.schneider at uke.uni-hamburg.de>
>> >To: FieldTrip discussion list <fieldtrip at science.ru.nl>
>> >Subject: Re: [FieldTrip] Search for a template children.
>> >Message-ID: <5540E249.3000200 at uke.uni-hamburg.de>
>> >Content-Type: text/plain; charset="windows-1252"; Format="flowed"
>> >
>> >Dear Helene,
>> >
>> >McGill University provides MNI brains for different age groups between
>> >4.5y to 18y.
>> >http://www.bic.mni.mcgill.ca/ServicesAtlases/NIHPD-obj1
>> >You will probably find the template brain you are searching for in this
>> >database.
>> >
>> >Best regards,
>> >Till
>> >
>> >--
>> >
>> >Till Schneider, PhD
>> >
>> >Cognitive and Clinical Neurophysiology Group
>> >Dept. of Neurophysiology and Pathophysiology
>> >University Medical Center Hamburg-Eppendorf
>> >Martinistr. 52
>> >20246 Hamburg
>> >Germany
>> >
>> >phone +49-40-7410-53188
>> >fax +49-40-7410-57126
>> >www.uke.de/neurophysiologie
>> >
>> >
>> >
>> >Am 29.04.15 um 14:45 schrieb H?l?ne Guiraud:
>> >> Dear community,
>> >>
>> >> My name is H?l?ne Guiraud and i'm working in DDL lab in Lyon (France)
>> >> on speech perception in children using MEG.
>> >> The children involved in the study don't pass MRI. We want to achieve
>> >> source reconstruction from a template. However I can't find a template
>> >> corresponding to the anatomy of a child (8-12 years).
>> >> Can someone tell me if there are template children and where I can
>> >> find them?
>> >>
>> >> Best,
>> >>
>> >> H?l?ne Guiraud
>> >>
>> >>
>> >> _______________________________________________
>> >> fieldtrip mailing list
>> >> fieldtrip at donders.ru.nl
>> >> http://mailman.science.ru.nl/mailman/listinfo/fieldtrip
>> >
>> >
>> >--
>> >
>> >_____________________________________________________________________
>> >
>> >Universit?tsklinikum Hamburg-Eppendorf; K?rperschaft des ?ffentlichen
>> >Rechts; Gerichtsstand: Hamburg | www.uke.de
>> >Vorstandsmitglieder: Prof. Dr. Burkhard G?ke (Vorsitzender), Prof. Dr.
>> >Dr. Uwe Koch-Gromus, Joachim Pr?l?, Rainer Schoppik
>> >_____________________________________________________________________
>> >
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>> >------------------------------
>> >
>> >Message: 3
>> >Date: Wed, 29 Apr 2015 16:25:35 +0200
>> >From: Keyvan Mahjoory <mahjoory86 at gmail.com>
>> >To: FieldTrip discussion list <fieldtrip at science.ru.nl>
>> >Subject: [FieldTrip] ICBM 152 templates in FT
>> >Message-ID:
>> >       <CA+qK++u51A-Z9XRP+MfckZJtG7d47oLtALbpEo=
>> UJp6-+4+7fA at mail.gmail.com>
>> >Content-Type: text/plain; charset="iso-8859-1"
>> >
>> >Dear Fieldtrip Users,
>> >
>> >I perform source analysis in Fieldtrip with a template head model (
>> >standard_bem <http://www.fieldtriptoolbox.org/template/headmodel>) and a
>> >template source model (cortex_5124.surf.gii
>> ><http://www.fieldtriptoolbox.org/template/sourcemodel>) to constarin
>> >estimated sources  on cortex. These templates are based on Colin27, But I
>> >prefere to use the template ICBM152 instead.
>> >Does FT include ICBM template? I mean templates for both head model and
>> >cortical surfe.
>> >
>> >Many Thanks in advance,
>> >Keyvan
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>> >------------------------------
>> >
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>> >End of fieldtrip Digest, Vol 53, Issue 23
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>
>
>
> --
> Hélène Guiraud
> Doctorante
> Université Lyon 2
> Laboratoire Dynamique Du Langage
> CNRS, UMR 5596
> Tel : 04 72 72 65 34
> guiraudh at gmail.com <Helene.Guiraud at univ-lyon2.fr>
>
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