[FieldTrip] re template for children

Hélène Guiraud guiraudh at gmail.com
Thu May 7 16:23:54 CEST 2015 

Hi,

Thank you.
I'm just trying to develop my scripts. A little help would be welcome! I'm
taking, thank!

Hélène

2015-05-07 15:56 GMT+02:00 Berdakh Abibullaev <berdakho at gmail.com>:

> Hi,
>
> I am also using the Dr. Richard's infant database. It took us sometime to
> figure out to how prepare forward models in FT.
> If you need I have scripts ready to use to get you started smoothly.
>
> ​Just let me know. ​
>
> ​​
> Thanks,
>
> Berdakh Abibullaev,
>
> Postdoctoral Research Scholar ,
> Laboratory for Non-invasive Brain-Machine Interfaces,
> Department of Electrical Eng. & Computer Science,
> University of Houston, E413, Engineering Building II,
> Houston, Texas, 77204-4005.
> https://www.facebook.com/UHBMIST
>
> On Thu, May 7, 2015 at 3:21 AM, Hélène Guiraud <guiraudh at gmail.com> wrote:
>
>> Hi Till and John,
>>
>> Thank you, this is perfect!
>>
>> Best regards,
>> Hélène
>>
>> 2015-04-30 14:12 GMT+02:00 RICHARDS, JOHN <RICHARDS at mailbox.sc.edu>:
>>
>>> We have a template for children‹actually have for infants from 2 weeks
>>> through adults at 89 years.  We also have average electrode positions for
>>> EGI sensor nets (GSN128, HGSN128) and the 10-10 system; and segmented
>>> priors, stereotaxic atlases, and segmented heads (BEM, FEM).  I also have
>>> been using this recently with FT for infants and child/adolescent/adult
>>> ages.
>>>
>>> WWW site: http://jerlab.psych.sc.edu/NeurodevelopmentalMRIDatabase/
>>> Fro www site: This is a database of average MRIs and associated MRI
>>> volumes for developmental MRI work. It consists of average MRI templates,
>>> segmented partial volume estimate volumes for GM, WM, T2W-derived CSF
>>> (Description
>>> <
>>> http://jerlab.psych.sc.edu/NeurodevelopmentalMRIDatabase/Description.html
>>> >
>>> ). The database is separated into head-based and brain-based averages.
>>> The
>>> data are separated by ages in months, years, 6-month, or 5-year intervals
>>> (Ages and Templates
>>> <
>>> http://jerlab.psych.sc.edu/NeurodevelopmentalMRIDatabase/agestemplates.htm
>>> l>). The templates are grouped into first year (2 weeks through 12
>>> months), early childhood (15 months through 4 years), childhood (4 years
>>> through 10 years), adolescence (10.5 years through 17.5 years) and adults
>>> (18 years through 89 years).
>>> Tools for cortical source analysis of EEG and ERP are provided.  These
>>> tools are based on the average MRI templates, segmenting, and atlases.
>>>
>>> Also see my www site, jerlab.psych.sc.edu for publications describing
>>> this.  We have a recent chapter that has a good description of the issues
>>> behind the database (with Wanze Xie). We have a paper accepted at
>>> Neuroimage for their upcoming ³Data Sharing² issue (with Carmen Sanchez,
>>> Michelle Phillips-Meek, and Wanze Xie).
>>>
>>> John
>>>
>>>
>>> ***********************************************
>>> John E. Richards Carolina Distinguished Professor
>>> Department of Psychology
>>> University of South Carolina
>>> Columbia, SC  29208
>>> Dept Phone: 803 777 2079
>>> Fax: 803 777 9558
>>> Email: richards-john at sc.edu
>>> HTTP: jerlab.psych.sc.edu
>>> ***********************************************
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> On 4/30/15, 6:00 AM, "fieldtrip-request at science.ru.nl"
>>> <fieldtrip-request at science.ru.nl> wrote:
>>>
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>>> >Today's Topics:
>>> >
>>> >   1. Search for a template children. (H?l?ne Guiraud)
>>> >   2. Re: Search for a template children. (Till Schneider)
>>> >   3. ICBM 152 templates in FT (Keyvan Mahjoory)
>>> >
>>> >
>>> >----------------------------------------------------------------------
>>> >
>>> >Message: 1
>>> >Date: Wed, 29 Apr 2015 14:45:56 +0200
>>> >From: H?l?ne Guiraud <guiraudh at gmail.com>
>>> >To: fieldtrip at science.ru.nl
>>> >Subject: [FieldTrip] Search for a template children.
>>> >Message-ID:
>>> >       <
>>> CAJ16KS_S7ednTeE2MgaLasRaWD4GK+0ChX0S+nYZzU_-ypdh4w at mail.gmail.com>
>>> >Content-Type: text/plain; charset="utf-8"
>>> >
>>> >Dear community,
>>> >
>>> >My name is H?l?ne Guiraud and i'm working in DDL lab in Lyon (France) on
>>> >speech perception in children using MEG.
>>> >The children involved in the study don't pass MRI. We want to achieve
>>> >source reconstruction from a template. However I can't find a template
>>> >corresponding to the anatomy of a child (8-12 years).
>>> >Can someone tell me if there are template children and where I can find
>>> >them?
>>> >
>>> >Best,
>>> >
>>> >H?l?ne Guiraud
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>>> >------------------------------
>>> >
>>> >Message: 2
>>> >Date: Wed, 29 Apr 2015 15:53:13 +0200
>>> >From: Till Schneider <t.schneider at uke.uni-hamburg.de>
>>> >To: FieldTrip discussion list <fieldtrip at science.ru.nl>
>>> >Subject: Re: [FieldTrip] Search for a template children.
>>> >Message-ID: <5540E249.3000200 at uke.uni-hamburg.de>
>>> >Content-Type: text/plain; charset="windows-1252"; Format="flowed"
>>> >
>>> >Dear Helene,
>>> >
>>> >McGill University provides MNI brains for different age groups between
>>> >4.5y to 18y.
>>> >http://www.bic.mni.mcgill.ca/ServicesAtlases/NIHPD-obj1
>>> >You will probably find the template brain you are searching for in this
>>> >database.
>>> >
>>> >Best regards,
>>> >Till
>>> >
>>> >--
>>> >
>>> >Till Schneider, PhD
>>> >
>>> >Cognitive and Clinical Neurophysiology Group
>>> >Dept. of Neurophysiology and Pathophysiology
>>> >University Medical Center Hamburg-Eppendorf
>>> >Martinistr. 52
>>> >20246 Hamburg
>>> >Germany
>>> >
>>> >phone +49-40-7410-53188
>>> >fax +49-40-7410-57126
>>> >www.uke.de/neurophysiologie
>>> >
>>> >
>>> >
>>> >Am 29.04.15 um 14:45 schrieb H?l?ne Guiraud:
>>> >> Dear community,
>>> >>
>>> >> My name is H?l?ne Guiraud and i'm working in DDL lab in Lyon (France)
>>> >> on speech perception in children using MEG.
>>> >> The children involved in the study don't pass MRI. We want to achieve
>>> >> source reconstruction from a template. However I can't find a template
>>> >> corresponding to the anatomy of a child (8-12 years).
>>> >> Can someone tell me if there are template children and where I can
>>> >> find them?
>>> >>
>>> >> Best,
>>> >>
>>> >> H?l?ne Guiraud
>>> >>
>>> >>
>>> >> _______________________________________________
>>> >> fieldtrip mailing list
>>> >> fieldtrip at donders.ru.nl
>>> >> http://mailman.science.ru.nl/mailman/listinfo/fieldtrip
>>> >
>>> >
>>> >--
>>> >
>>> >_____________________________________________________________________
>>> >
>>> >Universit?tsklinikum Hamburg-Eppendorf; K?rperschaft des ?ffentlichen
>>> >Rechts; Gerichtsstand: Hamburg | www.uke.de
>>> >Vorstandsmitglieder: Prof. Dr. Burkhard G?ke (Vorsitzender), Prof. Dr.
>>> >Dr. Uwe Koch-Gromus, Joachim Pr?l?, Rainer Schoppik
>>> >_____________________________________________________________________
>>> >
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>>> >------------------------------
>>> >
>>> >Message: 3
>>> >Date: Wed, 29 Apr 2015 16:25:35 +0200
>>> >From: Keyvan Mahjoory <mahjoory86 at gmail.com>
>>> >To: FieldTrip discussion list <fieldtrip at science.ru.nl>
>>> >Subject: [FieldTrip] ICBM 152 templates in FT
>>> >Message-ID:
>>> >       <CA+qK++u51A-Z9XRP+MfckZJtG7d47oLtALbpEo=
>>> UJp6-+4+7fA at mail.gmail.com>
>>> >Content-Type: text/plain; charset="iso-8859-1"
>>> >
>>> >Dear Fieldtrip Users,
>>> >
>>> >I perform source analysis in Fieldtrip with a template head model (
>>> >standard_bem <http://www.fieldtriptoolbox.org/template/headmodel>) and
>>> a
>>> >template source model (cortex_5124.surf.gii
>>> ><http://www.fieldtriptoolbox.org/template/sourcemodel>) to constarin
>>> >estimated sources  on cortex. These templates are based on Colin27, But
>>> I
>>> >prefere to use the template ICBM152 instead.
>>> >Does FT include ICBM template? I mean templates for both head model and
>>> >cortical surfe.
>>> >
>>> >Many Thanks in advance,
>>> >Keyvan
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>>
>>
>>
>> --
>> Hélène Guiraud
>> Doctorante
>> Université Lyon 2
>> Laboratoire Dynamique Du Langage
>> CNRS, UMR 5596
>> Tel : 04 72 72 65 34
>> guiraudh at gmail.com <Helene.Guiraud at univ-lyon2.fr>
>>
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-- 
Hélène Guiraud
Doctorante
Université Lyon 2
Laboratoire Dynamique Du Langage
CNRS, UMR 5596
Tel : 04 72 72 65 34
guiraudh at gmail.com <Helene.Guiraud at univ-lyon2.fr>
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