[FieldTrip] MNI coordinate to Anatomy

[Jörn M. Horschig]

Dear Rajat,

 

you can use ft_volumelookup in Fieldtrip (ahja, Arjen beat me to it!).

You can also specify an atlas in your cfg when using ft_sourceplot, which will show the anatomical label according to that atlas.

You need to specify an atlas which is in the same coordinate system, see 

http://fieldtrip.fcdonders.nl/tutorial/beamformingextended#plotting_sources_of_oscillatory_gamma-band_activity (scroll down to the exercise.

 

Best,

Jörn

 

--

 

Jörn M. Horschig, Software Engineer

 <http://www.artinis.com/> Artinis Medical Systems  |  +31 481 350 980 

 

From: fieldtrip-bounces at science.ru.nl [mailto:fieldtrip-bounces at science.ru.nl] On Behalf Of Rajat Thomas
Sent: Thursday, February 5, 2015 11:39 AM
To: fieldtrip at science.ru.nl
Subject: [FieldTrip] MNI coordinate to Anatomy

 

​Dear Fieldtrip users,

 

If I give you an MNI coordinate (in mm), is there a function (say from the SPM Anatomy toolbox) that I can use to get a label associated with that location?

 

(Without using the GUI)

 

Thank you.

 

Rajat

 

 

 

Rajat Mani Thomas

Social Brain Lab

Netherlands Institute for Neuroscience

Amsterdam

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