[FieldTrip] re template for children

RICHARDS, JOHN RICHARDS at mailbox.sc.edu
Thu Apr 30 14:12:22 CEST 2015


We have a template for children‹actually have for infants from 2 weeks
through adults at 89 years.  We also have average electrode positions for
EGI sensor nets (GSN128, HGSN128) and the 10-10 system; and segmented
priors, stereotaxic atlases, and segmented heads (BEM, FEM).  I also have
been using this recently with FT for infants and child/adolescent/adult
ages.

WWW site: http://jerlab.psych.sc.edu/NeurodevelopmentalMRIDatabase/
Fro www site: This is a database of average MRIs and associated MRI
volumes for developmental MRI work. It consists of average MRI templates,
segmented partial volume estimate volumes for GM, WM, T2W-derived CSF
(Description 
<http://jerlab.psych.sc.edu/NeurodevelopmentalMRIDatabase/Description.html>
). The database is separated into head-based and brain-based averages. The
data are separated by ages in months, years, 6-month, or 5-year intervals
(Ages and Templates
<http://jerlab.psych.sc.edu/NeurodevelopmentalMRIDatabase/agestemplates.htm
l>). The templates are grouped into first year (2 weeks through 12
months), early childhood (15 months through 4 years), childhood (4 years
through 10 years), adolescence (10.5 years through 17.5 years) and adults
(18 years through 89 years).
Tools for cortical source analysis of EEG and ERP are provided.  These
tools are based on the average MRI templates, segmenting, and atlases.

Also see my www site, jerlab.psych.sc.edu for publications describing
this.  We have a recent chapter that has a good description of the issues
behind the database (with Wanze Xie). We have a paper accepted at
Neuroimage for their upcoming ³Data Sharing² issue (with Carmen Sanchez,
Michelle Phillips-Meek, and Wanze Xie).

John


***********************************************
John E. Richards Carolina Distinguished Professor
Department of Psychology
University of South Carolina
Columbia, SC  29208
Dept Phone: 803 777 2079
Fax: 803 777 9558
Email: richards-john at sc.edu
HTTP: jerlab.psych.sc.edu
***********************************************








On 4/30/15, 6:00 AM, "fieldtrip-request at science.ru.nl"
<fieldtrip-request at science.ru.nl> wrote:

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>Today's Topics:
>
>   1. Search for a template children. (H?l?ne Guiraud)
>   2. Re: Search for a template children. (Till Schneider)
>   3. ICBM 152 templates in FT (Keyvan Mahjoory)
>
>
>----------------------------------------------------------------------
>
>Message: 1
>Date: Wed, 29 Apr 2015 14:45:56 +0200
>From: H?l?ne Guiraud <guiraudh at gmail.com>
>To: fieldtrip at science.ru.nl
>Subject: [FieldTrip] Search for a template children.
>Message-ID:
>	<CAJ16KS_S7ednTeE2MgaLasRaWD4GK+0ChX0S+nYZzU_-ypdh4w at mail.gmail.com>
>Content-Type: text/plain; charset="utf-8"
>
>Dear community,
>
>My name is H?l?ne Guiraud and i'm working in DDL lab in Lyon (France) on
>speech perception in children using MEG.
>The children involved in the study don't pass MRI. We want to achieve
>source reconstruction from a template. However I can't find a template
>corresponding to the anatomy of a child (8-12 years).
>Can someone tell me if there are template children and where I can find
>them?
>
>Best,
>
>H?l?ne Guiraud
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>Message: 2
>Date: Wed, 29 Apr 2015 15:53:13 +0200
>From: Till Schneider <t.schneider at uke.uni-hamburg.de>
>To: FieldTrip discussion list <fieldtrip at science.ru.nl>
>Subject: Re: [FieldTrip] Search for a template children.
>Message-ID: <5540E249.3000200 at uke.uni-hamburg.de>
>Content-Type: text/plain; charset="windows-1252"; Format="flowed"
>
>Dear Helene,
>
>McGill University provides MNI brains for different age groups between
>4.5y to 18y.
>http://www.bic.mni.mcgill.ca/ServicesAtlases/NIHPD-obj1
>You will probably find the template brain you are searching for in this
>database.
>
>Best regards,
>Till
>
>-- 
>
>Till Schneider, PhD
>
>Cognitive and Clinical Neurophysiology Group
>Dept. of Neurophysiology and Pathophysiology
>University Medical Center Hamburg-Eppendorf
>Martinistr. 52
>20246 Hamburg
>Germany
>
>phone +49-40-7410-53188
>fax +49-40-7410-57126
>www.uke.de/neurophysiologie
>
>
>
>Am 29.04.15 um 14:45 schrieb H?l?ne Guiraud:
>> Dear community,
>>
>> My name is H?l?ne Guiraud and i'm working in DDL lab in Lyon (France)
>> on speech perception in children using MEG.
>> The children involved in the study don't pass MRI. We want to achieve
>> source reconstruction from a template. However I can't find a template
>> corresponding to the anatomy of a child (8-12 years).
>> Can someone tell me if there are template children and where I can
>> find them?
>>
>> Best,
>>
>> H?l?ne Guiraud
>>
>>
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>
>--
>
>_____________________________________________________________________
>
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>Rechts; Gerichtsstand: Hamburg | www.uke.de
>Vorstandsmitglieder: Prof. Dr. Burkhard G?ke (Vorsitzender), Prof. Dr.
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>_____________________________________________________________________
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>Message: 3
>Date: Wed, 29 Apr 2015 16:25:35 +0200
>From: Keyvan Mahjoory <mahjoory86 at gmail.com>
>To: FieldTrip discussion list <fieldtrip at science.ru.nl>
>Subject: [FieldTrip] ICBM 152 templates in FT
>Message-ID:
>	<CA+qK++u51A-Z9XRP+MfckZJtG7d47oLtALbpEo=UJp6-+4+7fA at mail.gmail.com>
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>
>Dear Fieldtrip Users,
>
>I perform source analysis in Fieldtrip with a template head model (
>standard_bem <http://www.fieldtriptoolbox.org/template/headmodel>) and a
>template source model (cortex_5124.surf.gii
><http://www.fieldtriptoolbox.org/template/sourcemodel>) to constarin
>estimated sources  on cortex. These templates are based on Colin27, But I
>prefere to use the template ICBM152 instead.
>Does FT include ICBM template? I mean templates for both head model and
>cortical surfe.
>
>Many Thanks in advance,
>Keyvan
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