[FieldTrip] Spatio-temporal cluster-based permutation analysis on EEG sources
Emma Holmes
eh776 at york.ac.uk
Fri Oct 31 13:19:18 CET 2014
Dear all,
I am trying to perform spatio-temporal cluster statistics to the sources of
an EEG dataset, which I localised using the SPM8 toolbox.
For each participant (averaged across trials), I have a .nii image
containing the source reconstruction for each of two conditions at multiple
different time points. Each nifti file contains a matrix of 91 x 109 x 91,
which corresponds to the source estimates at each voxel.
My aim is to identify sources of activity that span large clusters of
voxels and/or time points, similar to what I have done previously with the
scalp data.
I understand that the function 'ft_sourcestatistics' should be able to
achieve this with the data output from the function 'ft_sourcegrandaverage'.
However, I am having difficulty structuring the data from the nifti files
in a format that can be successfully input to 'ft_sourcegrandaverage'.
The data that I am trying to input to 'ft_sourcegrandaverage' contains a
cell array of structures--one for each participant.
As far as I understand from the documentation, each structure should
contain a 'pos' field, which specifies the [x y z] co-ordinates for each
position in the matrix (in my case, a matrix of size 91*109*91 x 3).
I have also included a 'time' field, containing a vector of the time points
to which each .nii image corresponds and a 'dim' field containing the
vector [91 109 91].
Could you please let me know whether or not this is correct and in which
field(s) I should subsequently add the source reconstruction estimates at
each time point.
So far, I have tried including an 'avg' field with the data at each time
point (91 x 109 x 91 x ntps).
However, when I do so, I get the following error:
??? Undefined function or method 'fieldnames' for input arguments of type
'double'.
Error in ==> parameterselection at 47
tmp = fieldnames(data.avg);
Error in ==> ft_checkdata at 578
param = setdiff(parameterselection('all', data), exclude);
Error in ==> ft_sourcegrandaverage at 81
varargin{i} = ft_checkdata(varargin{i}, 'datatype', {'source'},
'feedback', 'no',
'inside', 'logical', 'sourcerepresentation', 'new');
I am using matlab version 7.7.0.471 (R2008b) and fieldtrip-20140415
(although I have also tried other fieldtrip versions).
Any help would be greatly appreciated.
Best wishes,
Emma
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