[FieldTrip] Problem with Geodesic 129 layout!!
KatrinH Heimann
katrinheimann at gmail.com
Sat Aug 23 18:08:26 CEST 2014
Dear all, my problems seem neverending. This time however i really need
help.
I implemented a pipeline for ERPs. All works now, trialdefinition,
preprocessing, channelreplacement, ica, componentrejection, final
artifactdetection, timelock of the single subject data. However, when I
wanna compute the grandaverage of the single subjects I get the following
error message:
computing average of avg over 19 subjects
Warning: discarding electrode information because it cannot be averaged
> In ft_timelockgrandaverage at 249
the call to "ft_timelockgrandaverage" took 0 seconds and required the
additional allocation of an estimated 3 MB
computing average of avg over 2 subjects
Warning: discarding electrode information because it cannot be averaged
> In ft_timelockgrandaverage at 249
the call to "ft_timelockgrandaverage" took 0 seconds and required the
additional allocation of an estimated 0 MB
the call to "ft_prepare_layout" took 0 seconds and required the additional
allocation of an estimated 0 MB
the call to "ft_topoplotER" took 0 seconds and required the additional
allocation of an estimated 0 MB
Furthermore in the plot of the significant clusters, the channelnames are
mixed up (do not correspond to my net)
I guess that there is a problem with the layout I use.
Here the code that I use
%For generating the layout (also in the single subjects):
cfg = [];
cfg.channel = obs_data.label;
cfg.layout = 'GSN-HydroCel-129.sfp';
cfg.feedback = 'yes';
lay = ft_prepare_layout(cfg);
cfg_neighb = [];
cfg_neighb.feedback = 'yes';
cfg_neighb.method = 'triangulation';
cfg_neighb.layout = lay;
neighbours = ft_prepare_neighbours(cfg_neighb, obs_data);
obs_data.elec = ft_read_sens('GSN-HydroCel-129.sfp');
%For computing the grand average
cfg = [];
cfg.channel = 'all';
cfg.latency = 'all';
cfg.parameter = 'avg';
cfg.keepindividual = 'no'
GA_90 = ft_timelockgrandaverage(cfg,all90{:});
GA_180 = ft_timelockgrandaverage(cfg,all180{:});
% "{:}" means to use data from all elements of the variable
For plotting the significant clusters
cfg = [];
cfg.style = 'blank';
cfg.layout = lay;
cfg.channellabels = 'yes';
cfg.highlight = 'labels';
cfg.highlightchannel = find(stat.mask);
cfg.comment = 'no';
figure; ft_topoplotER(cfg, GA_90)
title('Nonparametric: significant with cluster multiple comparison
correction')
Do you have ANY idea to this? I am really completely helpless....
thanks and best
Katrin
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