[FieldTrip] MNE tutorial

Robin robince at gmail.com
Wed May 1 18:41:37 CEST 2013

I am trying to run through the MNE tutorial here:


Unfortunately after the volumetric processing in freesurfer my
intermediate result looks wrong.

I have followed the steps (including interactive alignment to
Talairach) according to the tutorial. I wondered if anyone has any
idea what could be wrong, or could point to some more possible
diagnostic commands to run?

The original Subject01.mgz file seems to have been saved correctly.
But if I load the orig.mgz created with:
mri_convert -c -oc 0 0 0 Subject01masked.mgz orig.mgz
and plot it with ft_sourceplot it has the same offset and upside down
position as the final incorrectly segments freesurfer image. Could
this indicate a problem?

Thanks for any help,


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