[FieldTrip] obtaining voxel locations
Robin
robince at gmail.com
Tue Jul 9 18:14:40 CEST 2013
I was wondering how to get the voxel positions (or origin and voxel size)
for a fieltrip mri structure.
I have an anatomical scan which I have normalised to the T1 brain:
>> mrin
mrin =
anatomy: [181x217x181 double]
transform: [4x4 double]
dim: [181 217 181]
params: [1x1 struct]
initial: [4x4 double]
coordsys: 'spm'
cfg: [1x1 struct]
I can I obtain the location of any voxel in MNI coordinates (mm or cm)?
When loading a Nifti file (with load_nii) I can find origin and voxel_size
with:
voxel_size = abs(nii.hdr.dime.pixdim(2:4)); % vol in mm
origin = round(abs(nii.hdr.hist.originator(1:3)));
and then posmm = (vox-origin) .* voxel_size. Is there any way to do the
same from the fieldtrip structure? I can't find the corresponding header
information.
Thanks
Robin
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