[FieldTrip] ft_sourceinterpolate with stats data
"Jörn M. Horschig"
jm.horschig at donders.ru.nl
Mon Jul 8 11:30:39 CEST 2013
Hi Andreas,
all the chiefs are on vacation right now, and I do not know if it should
work or why it does not. Therefore, I created a bug on bugzilla:
http://bugzilla.fcdonders.nl/show_bug.cgi?id=2218
You can also sign up there and add yourself to the CC list to stay
informed about the progress on this. In the meanwhile I would suggest to
do as Haiteng proposed, as this is the only way to go right now.
Thanks for reporting :)
Best,
Jörn
On 7/8/2013 10:34 AM, Andreas Sauer wrote:
> Thanks for your answer, Haiteng! It also works for me when I
> interpolate i.e. 'stat'. However, it would be good to know why 'all'
> does not work, since it is described in the tutorial...
>
> Best,
>
> Andreas
>
>
> 2013/7/7 Haiteng Jiang <haiteng.jiang at gmail.com
> <mailto:haiteng.jiang at gmail.com>>
>
> Hi Andreas ,
> It is annoying that it doesn't work if you
> specify cfg.parameter 'all' and I don't know why either. However
> , I have a very simple solution for this by interpolating 'stat'
> and 'mask' then combining afterwards when you want to plot your
> statistic result. The FT code is something like this:
>
> cfg = [];
> cfg.voxelcoord = 'no';
> cfg.parameter = 'stat';
> cfg.interpmethod = 'nearest';
> cfg.coordsys = 'mni';
> statplot = ft_sourceinterpolate(cfg, stat,mri);
>
> cfg = [];
> cfg.voxelcoord = 'no';
> cfg.parameter = 'mask';
> cfg.interpmethod = 'nearest';
> cfg.coordsys = 'mni';
> mask = ft_sourceinterpolate(cfg,
> stat,mri);
> statplot.mask = mask.mask;
> Hope this helps.
> Best,
> Haiteng
>
> Message: 3
> Date: Sat, 6 Jul 2013 09:53:09 +0200
> From: Andreas Sauer <sauer.mpih at googlemail.com
> <mailto:sauer.mpih at googlemail.com>>
> To: FieldTrip discussion list <fieldtrip at science.ru.nl
> <mailto:fieldtrip at science.ru.nl>>
> Subject: [FieldTrip] ft_sourceinterpolate with stats data
> Message-ID:
>
> <CAHLSopWD2Q-RuAMJrvwZJGAajB6aUbDyrDN6_SFMdqu7HOgZ0g at mail.gmail.com
> <mailto:CAHLSopWD2Q-RuAMJrvwZJGAajB6aUbDyrDN6_SFMdqu7HOgZ0g at mail.gmail.com>>
> Content-Type: text/plain; charset="iso-8859-1"
>
>
> Dear All,
>
> after running source statistics I tried to plot the result.
> However, I
> always get the error that cfg.parameter 'all' can't be used
> since there is
> "no such field".
>
>
> I know that I can also specify single parameters, i.e. only
> the ones I want
> to interpolate. However, I would like to know why it doesn't
> work for me
> with all the parameters... Maybe it's only a minor thing, i.e.
> the FT
> version. But I want to make sure that there is no major error
> in my
> pipeline.
>
> Any help is as always very appreciated! Thanks!
>
> Best,
>
> Andreas
>
> --
> Andreas Sauer
> Max Planck Institute for Brain Research
> Deutschordenstra?e 46
>
> 60528 Frankfurt am Main
> Germany
>
> T: +49 69 96769 278 <tel:%2B49%2069%2096769%20278>
> F: +49 69 96769 327 <tel:%2B49%2069%2096769%20327>
> Email: sauer.mpih at gmail.com <mailto:sauer.mpih at gmail.com>
> www.brain.mpg.de <http://www.brain.mpg.de>
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> *****************************************
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>
>
>
> --
> Haiteng Jiang
> PhD candidate
> Neuronal Oscillations Group
> Donders Institute for Brain, Cognition and Behaviour
> Centre for Cognitive Neuroimaging
> Radboud University Nijmegen
>
> Visiting address
> Room 2.32
> Donders Centre for Cognitive Neuroimaging
> Kapittelweg 29
> 6525 EN Nijmegen
> the Netherlands
>
> Tel.: +31 (0)243668291 <tel:%2B31%20%280%29243668291>
> Web: https://sites.google.com/site/haitengjiang/
>
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> http://mailman.science.ru.nl/mailman/listinfo/fieldtrip
>
>
>
>
> --
> Dipl.-Psych. Andreas Sauer
> Max Planck Institute for Brain Research
> Deutschordenstraße 46
> 60528 Frankfurt am Main
> Germany
>
> T: +49 69 96769 278
> F: +49 69 96769 327
> Email: sauer.mpih at gmail.com <mailto:sauer.mpih at gmail.com>
> www.brain.mpg.de <http://www.brain.mpg.de>
>
>
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--
Jörn M. Horschig
PhD Student
Donders Institute for Brain, Cognition and Behaviour
Centre for Cognitive Neuroimaging
Radboud University Nijmegen
Neuronal Oscillations Group
FieldTrip Development Team
P.O. Box 9101
NL-6500 HB Nijmegen
The Netherlands
Contact:
E-Mail: jm.horschig at donders.ru.nl
Tel: +31-(0)24-36-68493
Web: http://www.ru.nl/donders
Visiting address:
Trigon, room 2.30
Kapittelweg 29
NL-6525 EN Nijmegen
The Netherlands
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