[FieldTrip] openmeeg matlab path

[Alexandre Gramfort]

Dear Octavian,

try something like this in the matlab prompt

setenv('PATH', '/opt/openmeeg/bin')
setenv('LD_LIBRARY_PATH', '/opt/openmeeg/lib')

on linux and on mac:

setenv('PATH', '/opt/openmeeg/bin')
setenv('DYLD_LIBRARY_PATH', '/opt/openmeeg/lib')

to test your install run:

system('om_assemble')

you should see something like:

>> system('om_assemble')
om_assemble version 2.2 compiled at Dec  3 2013 20:41:48

Not enough arguments
Please try "om_assemble -h" or "om_assemble --help "


ans =

     0

Hope this helps,
Alex

On Tue, Dec 3, 2013 at 7:04 PM, Octavian Lie <octavian.lie at gmail.com> wrote:
> Dear All,
>
> I installed openmeeg on my ubuntu 12.04 64 bit via github, tested it and
> works well from the terminal; I usually initiate the job from the terminal
> with:
>
> cd openmeeg/data/< subject>
> #!/usr/bin/env bash
> ...
>
> However matlab cannot see path, I get this matlab error when calling via
> fieldtrip
>
> Error using ft_hastoolbox (line 445)
> the OPENMEEG toolbox is not installed, see
> http://gforge.inria.fr/projects/openmeeg and
> http://gforge.inria.fr/frs/?group_id=435
>
> Error in ft_headmodel_openmeeg (line 35)
> ft_hastoolbox('openmeeg', 1);
> ...
>
> How can I make matlab see path? I have read that one has to add these
>
> export PATH=$PATH:/opt/openmeeg/bin
> export DYLD_LIBRARY_PATH=/opt/openmeeg/lib:$LD_LIBRARY_PATH
>
> Where have these to be added, in the startup.m, terminal, or linux script?
>
> Thank you,
>
> Octavian
>
>
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