[FieldTrip] using freesurfer cortical atlases

Luke Bloy luke.bloy at gmail.com
Thu Nov 8 14:11:12 CET 2012

Thanks this is will be much faster than my brute force method.


From: fieldtrip-bounces at science.ru.nl
[mailto:fieldtrip-bounces at science.ru.nl] On Behalf Of jan-mathijs schoffelen
Sent: Wednesday, November 07, 2012 1:21 PM
To: FieldTrip discussion list
Subject: Re: [FieldTrip] using freesurfer cortical atlases


Hi Luke,


If you read in the *.fif sourcemodel using ft_read_headshape, it contains a
field called 'orig'. The subfield orig.inuse links the vertices in the high
resolution tessellation to the vertices in the sourcemodel.






On Nov 7, 2012, at 3:00 PM, Luke Bloy wrote:



I'm using cortically constrained mne to look at some auditory ERfs. I'm
roughly following this tutorial,
http://fieldtrip.fcdonders.nl/tutorial/minimumnormestimate. What I would
like to do is to impart some anatomical information onto my findings. I can
load the desikan atlas created by freesurfer using ft_read_atlas, but the
points I get from this don't match the points I get from the sourcespace
that I created with mne_setup_source -iso -6.


Does anyone have any experience with this?





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fieldtrip at donders.ru.nl


Jan-Mathijs Schoffelen, MD PhD 


Donders Institute for Brain, Cognition and Behaviour, 
Centre for Cognitive Neuroimaging,
Radboud University Nijmegen, The Netherlands


Max Planck Institute for Psycholinguistics,

Nijmegen, The Netherlands


J.Schoffelen at donders.ru.nl

Telephone: +31-24-3614793


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