[FieldTrip] problems with speed of processing

Michael Stephan Michael.Stephan at esi-frankfurt.de
Wed Jul 11 11:40:17 CEST 2012


Dear Eliana,

if your data sets vary in size you should sort them according to size 
and then process them starting with the largest data set.

-- 
Michael Stephan
Ernst Strüngmann Institute for Neuroscience
in Cooperation with Max Planck Society
Deutschordenstraße 46
D-60528 Frankfurt am Main

eMail: Michael.Stephan at esi-frankfurt.de

> Hello Dear Fieldtrip Community,
>
> I am having now problems with processing my data. I am analyzing a quite
> big data set with 400 trials that are composed by 10 sec (re-sampled at
> 150Hz). I am doing first a demean, then planar gradient transformation,
> time-frequency analysis using multitapers and then combine the planar
> gradient again. For the first subject always runs normally, but for the
> second one matlab gets really slow. I am taking care in deleting the
> variables that I create with big amount of data after I don't need them
> any more, so I am using just one big file that is being safe at the end
> (average time-frequency across trials) for each of the subjects. Every
> time matlab starts to analyze a new subject I am using clear all (with
> exceptions like directory and name of subject) but stills with every new
> subject it gets slower and slower.
>
> Do you have any advises to make the analysis faster? Sometimes is too
> slow and the computer normally crashes after 3 subjects.
>
> Thank you very much for the attention.
>
> Best,
>
> --
> Eliana García Cossio
> Applied Neurotechnology Lab.
> Graduate School of Neural and Behavioural Science - Max Planck Research
> School
> Institute of Medical Psychology and Behavioural Neurobiology
> Universität Tübingen
> (+0049) 01 577-8587604
> Otfried-Müller-Str. 47, 72076
> Tübingen- Germany
>
>
>
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