[FieldTrip] question about MNI alignment

Ali Bahramisharif ali at cs.ru.nl
Wed Feb 29 21:10:54 CET 2012

Dear Fieldtrip users,

I want to create MNI-aligned grids in individual head-space, and I follow
the guidelines in :


I do not know how old this page is, but I noticed that for example in the
current version "cfg.coordinates" should be "cfg.coordsys". I have the
following problems:

1- When I run "ft_plot_mesh(template_grid);", I get a cubic grid which is
apparently different from the one shown in the page.

2- When I run, ft_plot_vol(hdm), it does not seem to be aligned to

I checked my segmented volumes, and they seem to be fine, and I did not
need to run flipdim. I am wondering whether my segmented data is correct
or it should be flipped somewhere. Please let me know if anybody knows how
to resolve this problem.


More information about the fieldtrip mailing list