[FieldTrip] CTF to SPM

[Davide Rivolta]

Yep, I realized it after sending the email.
It was silly indeed.

It works fine now,
Thanks,
Davide

On Wed, Feb 22, 2012 at 12:04 PM, jan-mathijs schoffelen <
jan.schoffelen at donders.ru.nl> wrote:

> Hi Davide,
>
> Perhaps putting the filename as a 'string' may do the trick. In that case
> it was indeed silly ;-).
>
> BW,
>
> JM
>
>  On Feb 22, 2012, at 11:04 AM, Davide Rivolta wrote:
>
>  Thanks again for the help. I still get an error regarding the name.
> Maybe is silly.
>
> This is my script:
>
>
> for i = 1:size(mri,1)
>     fullname = strcat(inpath, mri{i,1}, '_V2.mri');
>     mri_V2 = ft_read_mri(fullname);
>
>     cfg = [];
>     cfg.parameter = 'anatomy';
>     cfg.filename = mri_V2;
>     cfg.filetype = 'nifti';
>     ft_volumewrite(cfg, mri_V2);
>
> end;
>
> ?? Error using ==> fileparts at 17
> Input must be a row vector of characters.
> Error in ==> ft_volumewrite at 411
>     [pathstr, name, ext] = fileparts(cfg.filename);
>
>
>
>  Thanks again,
> Davide
>
>
>
>
> On Wed, Feb 22, 2012 at 10:47 AM, jan-mathijs schoffelen <
> jan.schoffelen at donders.ru.nl> wrote:
>
>> Dear Davide,
>>
>> Did you try 'anatomy' ?
>>
>> BW,
>>
>> Jan-Mathijs
>>
>>
>>  On Feb 22, 2012, at 10:05 AM, Davide Rivolta wrote:
>>
>>  Thank you for the replies.
>> I am trying with ft_volumewrite.
>>
>> I have a small problem. the configuration wants me to specify the
>> cfg.parameter, that is a "string, describing the functional data to be
>> processed, e.g. 'pow', 'coh' or 'nai' ".
>> I am a bit confused, since I have anatomical data, and I am not sure what
>> to put here.
>>
>> Any ideas?
>>
>> Thanks a lot,
>> Davide
>>
>>
>> On Tue, Feb 21, 2012 at 6:05 PM, jan-mathijs schoffelen <
>> jan.schoffelen at donders.ru.nl> wrote:
>>
>>> Hi Davide,
>>>
>>> If you use ft_read_mri to read in your *.mri you can use ft_volumewrite
>>> to save the volumetric data as nifti. You can look into the documentation
>>> of ft_volumewrite to see how this works.
>>>
>>> Best,
>>>
>>> Jan-Mathijs
>>>
>>>   On Feb 21, 2012, at 11:17 AM, Davide Rivolta wrote:
>>>
>>>   Dear all,
>>>
>>>
>>> I wish to ask whether there is a way to import anatomical CTF files
>>> (.V2) into SPM.
>>>
>>>
>>> Thanks,
>>> Davide
>>>
>>>
>>> --
>>> Davide Rivolta, PhD
>>>
>>> _______________________________________________
>>> fieldtrip mailing list
>>> fieldtrip at donders.ru.nl
>>> http://mailman.science.ru.nl/mailman/listinfo/fieldtrip
>>>
>>>
>>>    Jan-Mathijs Schoffelen, MD PhD
>>>
>>> Donders Institute for Brain, Cognition and Behaviour,
>>> Centre for Cognitive Neuroimaging,
>>> Radboud University Nijmegen, The Netherlands
>>>
>>> Max Planck Institute for Psycholinguistics,
>>> Nijmegen, The Netherlands
>>>
>>> J.Schoffelen at donders.ru.nl
>>> Telephone: +31-24-3614793
>>>
>>>
>>> _______________________________________________
>>> fieldtrip mailing list
>>> fieldtrip at donders.ru.nl
>>> http://mailman.science.ru.nl/mailman/listinfo/fieldtrip
>>>
>>
>>
>>
>> --
>> Davide Rivolta, PhD
>>
>> _______________________________________________
>> fieldtrip mailing list
>> fieldtrip at donders.ru.nl
>> http://mailman.science.ru.nl/mailman/listinfo/fieldtrip
>>
>>
>>    Jan-Mathijs Schoffelen, MD PhD
>>
>> Donders Institute for Brain, Cognition and Behaviour,
>> Centre for Cognitive Neuroimaging,
>> Radboud University Nijmegen, The Netherlands
>>
>> Max Planck Institute for Psycholinguistics,
>> Nijmegen, The Netherlands
>>
>> J.Schoffelen at donders.ru.nl
>> Telephone: +31-24-3614793
>>
>>
>> _______________________________________________
>> fieldtrip mailing list
>> fieldtrip at donders.ru.nl
>> http://mailman.science.ru.nl/mailman/listinfo/fieldtrip
>>
>
>
>
> --
> Davide Rivolta, PhD
>
> _______________________________________________
> fieldtrip mailing list
> fieldtrip at donders.ru.nl
> http://mailman.science.ru.nl/mailman/listinfo/fieldtrip
>
>
>    Jan-Mathijs Schoffelen, MD PhD
>
> Donders Institute for Brain, Cognition and Behaviour,
> Centre for Cognitive Neuroimaging,
> Radboud University Nijmegen, The Netherlands
>
> Max Planck Institute for Psycholinguistics,
> Nijmegen, The Netherlands
>
> J.Schoffelen at donders.ru.nl
> Telephone: +31-24-3614793
>
>
> _______________________________________________
> fieldtrip mailing list
> fieldtrip at donders.ru.nl
> http://mailman.science.ru.nl/mailman/listinfo/fieldtrip
>



-- 
Davide Rivolta, PhD
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