[FieldTrip] connectivity/amplitude correlation

[Magyari, Lilla]

hi Karl,

Maybe your version of FieldTrip is older, and therefore, it does not 
contain the references yet. You can check the reference documentation of 
ft_connectivity_corr on the FieldTrip wiki:
http://fieldtrip.fcdonders.nl/reference/ft_connectivity_corr
(The reference documentation of the functions is always automatically 
updated according to the latest version of the documentation part (or 
"help" part) of the script.)

The same articles (and more) can be found also under Literature (Method 
References)
http://fieldtrip.fcdonders.nl/references_to_implemented_methods under 
the title Connectivity Analysis.

I have not read the articles myself, so I am not sure if they give the 
information you need. But I was just wondering if you are aware of the 
recently available documentation of the function.

Best,
Lilla

Karl Doron wrote:
> Hi Lilla,
> 
> There is a reference for Rosenberg et al, 1998 for the partialization method in the code itself but I'm not seeing any in the help section. 
> 
> Thanks,
> karl
> 
> 
> On Aug 27, 2012, at 2:59 AM, "Magyari, Lilla" <Lilla.Magyari at mpi.nl> wrote:
> 
>> Dear Karl,
>>
>> There are four papers mentioned in the help of ft_connectivity_corr. I am wondering if any of those could answer your question.
>>
>> Best,
>> Lilla
>>
>> Karl Doron wrote:
>>> Hello,
>>> I'm wondering if there are any publications with the maths behind the functions for ft_connectivity_corr. I would specifically like to confirm (for a pending publication) how the amplitude correlation is computed when the function is given output from ft_freqanalysis which contains a time dimension (relevant cfg parameters pasted below). I've assumed this is occurring in the frequency domain across trials for sensor i and sensor j.
>>> cfg.channelcmb = chancmb;
>>> cfg.method     = 'mtmconvol';
>>> cfg.output     = 'fourier';
>>> cfg.keeptrials = 'yes';
>>> cfg.foi        = band(1):band(2);
>>> cfg.toi        = 1.8:0.01:3.0;
>>> Thanks for any feedback!
>>> Karl Doron, Ph.D.
>>> UC, Santa Barbara
>>> ------------------------------------------------------------------------
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>>> fieldtrip mailing list
>>> fieldtrip at donders.ru.nl
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