volumewrite, volumenormalize and mri orientations

Tom Holroyd tomh at KURAGE.NIMH.NIH.GOV
Fri Sep 14 19:51:47 CEST 2007

On Fri, 2007-09-14 at 11:35 +0100, Marie Smith wrote:
> Dear Jan-Mathijs,
> Thanks for your response. The reason for trying to export the data
> somewhere else is two-fold. Firstly as you mention to aid
> localisation to brain regions and secondly as I want to normalise the
> results of several subjects to a template brain.

One way to do that is to use AFNI. AFNI is free, and you can import
matlab volumes.


AFNI can warp brains to Talairach space (now automated!) and match to a
template, do stats, etc. I'm attaching a thing that writes a source
volume from Fieldtrip out as an AFNI BRIK using the matlab tools found
on the links above.

Dr. Tom
For in one's heart one loves only one's child and one's work; and where
there is great love to oneself, then is it the sign of pregnancy: so
have I found it. Thus spoke Zarathustra.

The aim of this list is to facilitate the discussion between users of the FieldTrip  toolbox, to share experiences and to discuss new ideas for MEG and EEG analysis. See also http://listserv.surfnet.nl/archives/fieldtrip.html and http://www.ru.nl/fcdonders/fieldtrip.
-------------- next part --------------
A non-text attachment was scrubbed...
Name: writesourcebrik.m
Type: text/x-objcsrc
Size: 1238 bytes
Desc: not available
URL: <http://mailman.science.ru.nl/pipermail/fieldtrip/attachments/20070914/4d3c6d73/attachment-0002.bin>

More information about the fieldtrip mailing list