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<div class="gmail_default">Hi Focko,</div>
<div class="gmail_default"><br class="">
</div>
<div class="gmail_default">Attachments are typically scrubbed from e-mail archives so that’s why (of course) you didn’t find it. </div>
<div class="gmail_default"><br class="">
</div>
<div class="gmail_default">I assume you have seen Paolo’s answer to this thread? </div>
<div class="gmail_default"><br class="">
</div>
<div class="gmail_default">For completeness, here it is:</div>
<div class="gmail_default"><br class="">
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<div class="gmail_default">If you execute the sourcemesh pipeline of Jan based on Freesurfer, you receive the Desikan-Kiliany Atlas for each subject automatically, for free ;-).</div>
<div class="gmail_default"><br class="">
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<div class="gmail_default">Best,</div>
<div class="gmail_default"><br class="">
</div>
<div class="gmail_default">Paolo<br class="">
</div>
<div class=""><br class="">
</div>
<div class="">Otherwise, using Google I found a volumetric version of th DK atlas in (I presume templat volumetric MNI space, but please check) on neurovault: <a href="https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fneurovault.org%2Fimages%2F23262&data=05%7C01%7Cfieldtrip%40science.ru.nl%7C266ac6cb2f70407dec3308dbf631ab4a%7C084578d9400d4a5aa7c7e76ca47af400%7C1%7C0%7C638374465407639081%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=RSDC1r0ruVpa2MBZiA9OBs33IaeRG%2FfTio8SocUA%2FBk%3D&reserved=0" originalsrc="https://neurovault.org/images/23262" shash="z6OTPbN7y3w11RFuwK5jx2T+VqowGbd1ANCL3LxQd3dp53zZegKQH2bKiwQWILHIx3bq9JMUd3Ny1OJzlhyRh0boTYbjaCEcOZ7oXw6tMFj6IKOHqMO5jBIhOQ1ic5ERR46oc4Ls5lAIbTCeinsifRPSzgbRKwKAosfDZB0iG6U=" class="">https://neurovault.org/images/23262</a></div>
<div class=""><br class="">
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<div class="">Jan-Mathijs</div>
<div class=""><br class="">
</div>
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<br class="">
<div>
<blockquote type="cite" class="">
<div class="">Begin forwarded message:</div>
<br class="Apple-interchange-newline">
<div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;" class="">
<span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(0, 0, 0, 1.0);" class=""><b class="">From:
</b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class="">Focko Higgen <<a href="mailto:f.higgen@uke.de" class="">f.higgen@uke.de</a>><br class="">
</span></div>
<div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;" class="">
<span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(0, 0, 0, 1.0);" class=""><b class="">Subject:
</b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class=""><b class="">Re: [EXT] [FieldTrip] Desikan-Kiliany atlas</b><br class="">
</span></div>
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<span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(0, 0, 0, 1.0);" class=""><b class="">Date:
</b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class="">6 December 2023 at 08:52:22 CET<br class="">
</span></div>
<div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;" class="">
<span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(0, 0, 0, 1.0);" class=""><b class="">To:
</b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class="">"Schoffelen, J.M. (Jan Mathijs)" <<a href="mailto:janmathijs.schoffelen@donders.ru.nl" class="">janmathijs.schoffelen@donders.ru.nl</a>><br class="">
</span></div>
</blockquote>
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<div class="">Dear Jan Mathijs,
<div class=""><br class="">
</div>
<div class="">thank you for your response and please excuse my unclear question.</div>
<div class="">I found a thread in the fieldtrip mailing list, where somebody asked:</div>
<div class=""><br class="">
</div>
<div class=""><i class="">Dear fieldtrip community,<br class="">
<br class="">
Desikan-Kiliany atlas is not available in the "fieldtrip/template/xxx" directory. Does anybody know where I can access it ? I require it in the same structure as other field trip atlases (e.g., AAL).<br class="">
<br class="">
aal = ft_read_atlas('fieldtrip/template/atlas/aal/ROI_MNI_V4.nii')<br class="">
<br class="">
aal =<br class="">
dim: [91 109 91]<br class="">
hdr: [1x1 struct]<br class="">
transform: [4x4 double]<br class="">
unit: 'mm'<br class="">
tissue: [91x109x91 double]<br class="">
tissuelabel: {1x116 cell}</i><br class="">
<br class="">
<div class=""><br class="">
</div>
<div class="">And you responded:</div>
<div class=""><br class="">
</div>
<div class=""><i class="">Hi Neeraj,<br class="">
<br class="">
See attached. Good luck,<br class="">
Jan-Mathijs</i><br class="">
</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
<div class="">As I would also like to use a Desikan as well as a Destreiux parcellation for my EEG data, I was wondering whether I can find these parcellations somewhere in the fieldtrip universe?</div>
<div class=""><br class="">
</div>
<div class="">Thank you and kind regards,</div>
<div class="">Focko</div>
<div class=""><br class="">
</div>
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und Poliklinik für Neurologie</span><br style="caret-color: rgb(0, 0, 0); font-family: Arial; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class="">
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</span></span></span></span></div>
<br class="">
<blockquote type="cite" class="">Am 16.11.2023 um 17:46 schrieb Schoffelen, J.M. (Jan Mathijs) via fieldtrip <<a href="mailto:fieldtrip@science.ru.nl" class="">fieldtrip@science.ru.nl</a>>:<br class="">
<br class="Apple-interchange-newline">
Hi Focko,<br class="">
<br class="">
I have keine Ahnung what you mean by ’the Desikan-Kiliany atlas thread’, so I cannot be of any help at this point in time.<br class="">
<br class="">
Best wishes,<br class="">
Jan-Mathijs<br class="">
<br class="">
<blockquote type="cite" class="">On 15 Nov 2023, at 18:59, Focko Higgen via fieldtrip <<a href="mailto:fieldtrip@science.ru.nl" class="">fieldtrip@science.ru.nl</a>> wrote:<br class="">
<br class="">
Dear Jan-Mathijs,<br class="">
<br class="">
I just found the Desikan-Kiliany atlas thread, but I can’t find the file you attached.<br class="">
Could you send me the atlas as well?<br class="">
I would be very thankful!<br class="">
<br class="">
Kind regards,<br class="">
Focko<br class="">
<br class="">
<br class="">
<br class="">
--<br class="">
<br class="">
_____________________________________________________________________<br class="">
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Vorstandsmitglieder: Prof. Dr. Christian Gerloff (Vorsitzender), Joachim Prölß, Prof. Dr. Blanche Schwappach-Pignataro, Matthias Waldmann (komm.)</p>
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